Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:78587653..78594388-chr15:78727556..78733158,9	MCF-7	breast:
2	chr15:78582861..78585350-chr15:78727780..78730750,2	MCF-7	breast:
3	chr15:78589324..78591746-chr15:78726632..78728415,2	K562	blood:

Variant related genes	Relation type
ENSG00000140395	Chromatin interaction
ENSG00000259562	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10450964	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10450994	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10450995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10851904	1.00[EUR][1000 genomes]
rs10851905	1.00[EUR][1000 genomes]
rs11072773	1.00[EUR][1000 genomes]
rs11855783	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11856232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11856900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969842	1.00[EUR][1000 genomes]
rs16969845	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs4887040	1.00[EUR][1000 genomes]
rs4887044	1.00[EUR][1000 genomes]
rs55927929	1.00[EUR][1000 genomes]
rs56182392	1.00[AMR][1000 genomes]
rs56740585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432603	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59046470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59098354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61208420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78720800-78728400	Weak transcription	K562	blood
3	chr15:78725000-78729400	Weak transcription	Liver	Liver
4	chr15:78726400-78729600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:78726800-78729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:78726800-78729400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr15:78726800-78729400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:78726800-78729600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:78726800-78729600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:78727000-78729400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:78727200-78729200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:78727200-78729600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:78727800-78729400	Weak transcription	HepG2	liver

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