Variant report

Variant	rs11072773
Chromosome Location	chr15:78939575-78939576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10450964	1.00[EUR][1000 genomes]
rs10450994	1.00[EUR][1000 genomes]
rs10450995	1.00[EUR][1000 genomes]
rs11072772	0.80[AMR][1000 genomes]
rs11633585	1.00[CHB][hapmap]
rs11636732	1.00[CHB][hapmap]
rs11855783	1.00[EUR][1000 genomes]
rs11856283	1.00[EUR][1000 genomes]
rs11856900	1.00[EUR][1000 genomes]
rs12899226	1.00[CHB][hapmap]
rs12903575	1.00[CHB][hapmap]
rs12903839	1.00[CHB][hapmap]
rs12914367	1.00[CHB][hapmap]
rs1394372	1.00[CHB][hapmap]
rs17588	1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs28820031	1.00[EUR][1000 genomes]
rs2938673	1.00[CHB][hapmap]
rs34990112	1.00[EUR][1000 genomes]
rs4421942	1.00[CHB][hapmap]
rs4628927	1.00[CHB][hapmap]
rs55927929	1.00[EUR][1000 genomes]
rs56740585	1.00[EUR][1000 genomes]
rs56778876	1.00[EUR][1000 genomes]
rs58432603	1.00[EUR][1000 genomes]
rs59046470	1.00[EUR][1000 genomes]
rs60507267	1.00[EUR][1000 genomes]
rs61208420	1.00[EUR][1000 genomes]
rs73467224	0.80[AMR][1000 genomes]
rs73467242	1.00[EUR][1000 genomes]
rs73467244	1.00[EUR][1000 genomes]
rs73467262	1.00[EUR][1000 genomes]
rs73467265	1.00[EUR][1000 genomes]
rs73467279	1.00[EUR][1000 genomes]
rs74024421	1.00[EUR][1000 genomes]
rs8028991	0.90[AMR][1000 genomes]
rs9920382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv570202	chr15:78915245-78953785	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78933800-78960200	Weak transcription	Right Atrium	heart
2	chr15:78937600-78942800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:78937800-78942800	Weak transcription	Liver	Liver
4	chr15:78937800-78942800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:78937800-78943000	Weak transcription	Psoas Muscle	Psoas

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