Variant report

Variant	rs73467244
Chromosome Location	chr15:78963296-78963297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78954699..78956761-chr15:78960966..78963613,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10450964	1.00[EUR][1000 genomes]
rs10450994	1.00[EUR][1000 genomes]
rs10450995	1.00[EUR][1000 genomes]
rs11072773	1.00[EUR][1000 genomes]
rs11855783	1.00[EUR][1000 genomes]
rs11856283	1.00[EUR][1000 genomes]
rs17588	1.00[EUR][1000 genomes]
rs28820031	1.00[EUR][1000 genomes]
rs55927929	1.00[EUR][1000 genomes]
rs56740585	1.00[EUR][1000 genomes]
rs56778876	1.00[EUR][1000 genomes]
rs58432603	1.00[EUR][1000 genomes]
rs59046470	1.00[EUR][1000 genomes]
rs60507267	1.00[EUR][1000 genomes]
rs61208420	1.00[EUR][1000 genomes]
rs73467242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467262	1.00[EUR][1000 genomes]
rs73467265	1.00[EUR][1000 genomes]
rs73467279	1.00[EUR][1000 genomes]
rs74024421	1.00[EUR][1000 genomes]
rs8037722	1.00[ASN][1000 genomes]
rs9920382	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv974713	chr15:78945824-78996783	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv457209	chr15:78949127-78986805	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv471256	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv570203	chr15:78949127-78986805	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78957000-78964200	Weak transcription	Fetal Kidney	kidney
2	chr15:78960600-78964200	Weak transcription	Left Ventricle	heart
3	chr15:78960600-78964200	Weak transcription	Right Ventricle	heart
4	chr15:78960800-78963600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:78960800-78964200	Weak transcription	HepG2	liver
6	chr15:78961000-78963600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:78961000-78964000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:78961600-78964800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:78961800-78963600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:78961800-78964200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:78962000-78963600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:78962000-78964000	Weak transcription	Fetal Stomach	stomach
13	chr15:78962200-78963600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:78962400-78963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:78962400-78963600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:78962400-78963800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:78963000-78963800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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