Variant report

Variant	rs11856232
Chromosome Location	chr15:78715048-78715049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78714909..78715620-chr15:78730027..78730764,2	K562	blood:
2	chr15:78714000..78716972-chr15:78729600..78732275,2	K562	blood:
3	chr15:78600767..78601452-chr15:78715022..78715549,2	K562	blood:
4	chr15:78714083..78716832-chr15:78721303..78723382,2	MCF-7	breast:
5	chr15:78600505..78601390-chr15:78714866..78715903,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10450964	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10450994	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10450995	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10851904	1.00[EUR][1000 genomes]
rs10851905	1.00[EUR][1000 genomes]
rs11855783	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11856900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969842	1.00[EUR][1000 genomes]
rs16969845	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2656068	1.00[EUR][1000 genomes]
rs34990112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4887040	1.00[EUR][1000 genomes]
rs4887044	1.00[EUR][1000 genomes]
rs56182392	1.00[AMR][1000 genomes]
rs56740585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432603	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59046470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59098354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61208420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78700800-78722000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:78712600-78718000	Weak transcription	Hela-S3	cervix
4	chr15:78713000-78715600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:78713000-78718000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:78713200-78715200	Enhancers	NHDF-Ad	bronchial
7	chr15:78713400-78715200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:78713400-78717400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:78713400-78717600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:78713600-78715200	Enhancers	Fetal Intestine Small	intestine
11	chr15:78713600-78716000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr15:78713800-78715200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:78714000-78715800	Enhancers	Fetal Intestine Large	intestine
14	chr15:78714200-78715200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:78714200-78715200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr15:78714200-78715400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:78714600-78716000	Enhancers	Colonic Mucosa	Colon
18	chr15:78714800-78715200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:78714800-78715200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr15:78714800-78715200	Enhancers	Pancreas	Pancrea
21	chr15:78714800-78715400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:78714800-78715400	Enhancers	Fetal Muscle Leg	muscle
23	chr15:78714800-78716000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:78715000-78715200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:78715000-78715200	Enhancers	Brain Substantia Nigra	brain
26	chr15:78715000-78715200	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr15:78715000-78715200	Enhancers	Ovary	ovary
28	chr15:78715000-78715200	Enhancers	Rectal Smooth Muscle	rectum
29	chr15:78715000-78715400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr15:78715000-78715400	Bivalent Enhancer	Adipose Nuclei	Adipose
31	chr15:78715000-78715400	Enhancers	Colon Smooth Muscle	Colon
32	chr15:78715000-78715400	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr15:78715000-78715400	Enhancers	A549	lung
34	chr15:78715000-78715400	Flanking Active TSS	HepG2	liver
35	chr15:78715000-78715600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr15:78715000-78715600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr15:78715000-78715600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:78715000-78715600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr15:78715000-78715600	Enhancers	Dnd41	blood
40	chr15:78715000-78716200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:78715000-78720800	Enhancers	Primary hematopoietic stem cells	blood
42	chr15:78715000-78721000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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