Variant report

Variant	rs11857829
Chromosome Location	chr15:55581242-55581243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:55484699..55490442-chr15:55579270..55584640,8	K562	blood:
2	chr15:55525732..55527261-chr15:55579170..55581534,2	K562	blood:
3	chr15:55579295..55584870-chr15:55607881..55612970,10	K562	blood:
4	chr15:55540071..55542542-chr15:55580150..55582152,2	K562	blood:
5	chr15:55485508..55492313-chr15:55579801..55583590,12	K562	blood:
6	chr15:55580259..55584808-chr15:55609765..55612829,5	K562	blood:
7	chr15:55579894..55582757-chr15:55689915..55691723,2	K562	blood:
8	chr15:55580643..55583951-chr15:55698978..55701737,3	K562	blood:
9	chr15:55509907..55510441-chr15:55581136..55581807,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261652	Chromatin interaction
ENSG00000069943	Chromatin interaction
ENSG00000260916	Chromatin interaction
ENSG00000225973	Chromatin interaction
ENSG00000069974	Chromatin interaction
ENSG00000137876	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11855032	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11855084	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11855490	0.85[CEU][hapmap]
rs11856786	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73413689	1.00[EUR][1000 genomes]
rs8038091	0.85[CEU][hapmap]
rs8042411	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv1036924	chr15:55527874-55616480	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv569522	chr15:55532211-55611126	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv904241	chr15:55534342-55611126	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv904242	chr15:55550755-55611126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv569524	chr15:55558624-55612511	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55574400-55581400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr15:55576800-55582800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:55579000-55582800	Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr15:55580000-55581400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr15:55580000-55582800	Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr15:55580000-55583000	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr15:55580200-55582800	Active TSS	Stomach Mucosa	stomach
8	chr15:55580200-55582800	Active TSS	K562	blood
9	chr15:55580400-55581400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr15:55580400-55581800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr15:55580600-55581800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr15:55580600-55582800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr15:55580600-55582800	Active TSS	HMEC	breast
14	chr15:55580600-55583000	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr15:55580800-55581400	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr15:55580800-55581400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr15:55580800-55581400	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr15:55580800-55581600	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr15:55580800-55581600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr15:55580800-55581600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:55580800-55581600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:55580800-55581600	Flanking Active TSS	HUVEC	blood vessel
23	chr15:55580800-55581800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:55580800-55581800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:55580800-55582800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:55580800-55582800	Active TSS	Liver	Liver
27	chr15:55580800-55582800	Active TSS	Fetal Stomach	stomach
28	chr15:55580800-55583000	Active TSS	Rectal Smooth Muscle	rectum
29	chr15:55581000-55581400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr15:55581000-55581400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr15:55581000-55581400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:55581000-55581400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
33	chr15:55581000-55581400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:55581000-55581400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:55581000-55581400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr15:55581000-55581400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:55581000-55581400	Active TSS	Adipose Nuclei	Adipose
38	chr15:55581000-55581400	Flanking Active TSS	Fetal Kidney	kidney
39	chr15:55581000-55581400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
40	chr15:55581000-55581400	Flanking Active TSS	Thymus	Thymus
41	chr15:55581000-55581400	Flanking Active TSS	NHEK	skin
42	chr15:55581000-55581600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:55581000-55581600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:55581000-55581600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:55581000-55581600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:55581000-55581600	Enhancers	Fetal Heart	heart
47	chr15:55581000-55581600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr15:55581000-55581600	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr15:55581000-55581600	Flanking Active TSS	HepG2	liver
50	chr15:55581000-55581600	Flanking Active TSS	Osteobl	bone

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