Variant report

Variant	rs11858481
Chromosome Location	chr15:58689197-58689198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58688310..58690112-chr15:58694254..58696812,2	K562	blood:
2	chr15:58687772..58690120-chr15:58696730..58698896,2	MCF-7	breast:
3	chr15:58624606..58626295-chr15:58688208..58690512,2	MCF-7	breast:
4	chr15:58685871..58690225-chr15:58716411..58720519,4	K562	blood:
5	chr15:58687414..58690448-chr15:58690989..58693323,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11853674	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855284	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905732	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12906722	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16940204	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2043084	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35128881	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487766	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171102	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58679400-58690600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr15:58681600-58693400	Weak transcription	Pancreas	Pancrea
3	chr15:58683600-58693600	Weak transcription	Spleen	Spleen
4	chr15:58685400-58689600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:58685600-58689800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:58685800-58690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:58686000-58689800	Weak transcription	Placenta	Placenta
8	chr15:58686000-58690600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:58686200-58689400	Weak transcription	HSMMtube	muscle
10	chr15:58686200-58692200	Weak transcription	Liver	Liver
11	chr15:58686200-58693000	Weak transcription	Fetal Kidney	kidney
12	chr15:58686600-58689600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:58687000-58689800	Enhancers	NHDF-Ad	bronchial
14	chr15:58687000-58690400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:58687000-58691000	Enhancers	K562	blood
16	chr15:58687400-58689400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:58687400-58689600	Enhancers	Osteobl	bone
18	chr15:58687600-58689400	Enhancers	HMEC	breast
19	chr15:58687600-58690200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:58687800-58689200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:58687800-58689400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:58687800-58689400	Enhancers	NHEK	skin
23	chr15:58687800-58689600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:58687800-58690200	Weak transcription	Esophagus	oesophagus
25	chr15:58688000-58689200	Enhancers	NHLF	lung
26	chr15:58688000-58689600	Enhancers	Hela-S3	cervix
27	chr15:58688200-58689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:58689000-58689200	Enhancers	Fetal Lung	lung
29	chr15:58689000-58689600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:58689000-58690200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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