Variant report

Variant	rs7171102
Chromosome Location	chr15:58687530-58687531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58622487..58624173-chr15:58685578..58687624,2	K562	blood:
2	chr15:58685871..58690225-chr15:58716411..58720519,4	K562	blood:
3	chr15:58687414..58690448-chr15:58690989..58693323,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11853674	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11855284	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858481	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905732	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12906722	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16940204	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043084	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35128881	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs487766	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58679400-58690600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr15:58680000-58688000	Weak transcription	NHLF	lung
3	chr15:58681600-58693400	Weak transcription	Pancreas	Pancrea
4	chr15:58682000-58687800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:58682800-58687600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:58682800-58687600	Weak transcription	HSMM	muscle
7	chr15:58683600-58693600	Weak transcription	Spleen	Spleen
8	chr15:58685400-58689600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:58685600-58687600	Weak transcription	HMEC	breast
10	chr15:58685600-58687800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:58685600-58689800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:58685800-58687800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:58685800-58690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:58686000-58689800	Weak transcription	Placenta	Placenta
15	chr15:58686000-58690600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:58686200-58689400	Weak transcription	HSMMtube	muscle
17	chr15:58686200-58692200	Weak transcription	Liver	Liver
18	chr15:58686200-58693000	Weak transcription	Fetal Kidney	kidney
19	chr15:58686600-58689600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:58686800-58687800	Enhancers	Esophagus	oesophagus
21	chr15:58686800-58688200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:58687000-58688200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:58687000-58689800	Enhancers	NHDF-Ad	bronchial
24	chr15:58687000-58690400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:58687000-58691000	Enhancers	K562	blood
26	chr15:58687400-58687600	Enhancers	Brain Angular Gyrus	brain
27	chr15:58687400-58687600	Enhancers	Brain Cingulate Gyrus	brain
28	chr15:58687400-58689000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:58687400-58689400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:58687400-58689600	Enhancers	Osteobl	bone

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