Variant report

Variant	rs11859209
Chromosome Location	chr16:59356847-59356848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11859307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860046	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860858	0.85[AFR][1000 genomes]
rs11861080	0.85[AMR][1000 genomes]
rs11861993	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862812	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863882	0.90[AFR][1000 genomes]
rs11865643	0.81[AFR][1000 genomes]
rs11865770	0.84[AFR][1000 genomes]
rs11866674	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11867011	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7188405	0.85[AMR][1000 genomes]
rs8046174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8048269	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8052067	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054778	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8056691	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8061349	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8063982	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59332000-59362600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:59355000-59363000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr16:59355200-59363000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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