Variant report

Variant	rs8061349
Chromosome Location	chr16:59308512-59308513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11859209	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11859307	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11860046	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11860449	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11860858	1.00[AFR][1000 genomes]
rs11861993	0.87[AMR][1000 genomes]
rs11862812	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11865643	0.89[AFR][1000 genomes]
rs11866674	0.90[AFR][1000 genomes]
rs11867011	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8046174	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8048269	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8052067	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8054463	0.93[AFR][1000 genomes]
rs8054778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8063982	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3414306	chr16:59303551-59308549	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59307600-59308800	Enhancers	Fetal Heart	heart
2	chr16:59308400-59309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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