Variant report

Variant	rs11862812
Chromosome Location	chr16:59344076-59344077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11859209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11859307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860858	0.90[AFR][1000 genomes]
rs11861080	0.85[AMR][1000 genomes]
rs11861993	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863882	0.84[AFR][1000 genomes]
rs11865643	0.86[AFR][1000 genomes]
rs11865770	0.82[AFR][1000 genomes]
rs11866674	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11867011	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7188405	0.85[AMR][1000 genomes]
rs8046174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8048269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8052067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054463	0.84[AFR][1000 genomes]
rs8054778	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8056691	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8061349	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8063982	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59332000-59362600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links