Variant report

Variant	rs11860858
Chromosome Location	chr16:59303482-59303483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11859209	0.85[AFR][1000 genomes]
rs11859307	0.85[AFR][1000 genomes]
rs11860046	0.97[AFR][1000 genomes]
rs11860449	0.85[AFR][1000 genomes]
rs11861575	1.00[AMR][1000 genomes]
rs11862812	0.90[AFR][1000 genomes]
rs11865643	0.89[AFR][1000 genomes]
rs11866674	0.90[AFR][1000 genomes]
rs11867011	0.95[AFR][1000 genomes]
rs60942140	1.00[AMR][1000 genomes]
rs61118401	1.00[AMR][1000 genomes]
rs8046174	0.84[AFR][1000 genomes]
rs8048269	0.97[AFR][1000 genomes]
rs8049201	1.00[AMR][1000 genomes]
rs8052067	0.97[AFR][1000 genomes]
rs8054463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054778	1.00[AFR][1000 genomes]
rs8056691	1.00[AFR][1000 genomes]
rs8061349	1.00[AFR][1000 genomes]
rs8061739	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59301600-59303600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr16:59302400-59303600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:59303200-59303600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr16:59303400-59303600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr16:59303400-59303800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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