Variant report

Variant	rs11867232
Chromosome Location	chr17:66774962-66774963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66773647..66776231-chr17:67231747..67233386,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11867173	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11869086	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11871523	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16967199	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16967205	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16967208	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973309	0.82[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16973316	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57197545	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58039149	0.87[EUR][1000 genomes]
rs59913929	0.83[EUR][1000 genomes]
rs60553909	0.87[EUR][1000 genomes]
rs6501742	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6501758	0.87[EUR][1000 genomes]
rs6501759	0.89[EUR][1000 genomes]
rs68139244	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7211767	0.87[EUR][1000 genomes]
rs7211958	0.87[EUR][1000 genomes]
rs7215386	0.87[EUR][1000 genomes]
rs7218023	0.87[EUR][1000 genomes]
rs7223634	0.87[EUR][1000 genomes]
rs72631340	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72631341	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72851039	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8069179	0.94[EUR][1000 genomes]
rs8070095	0.81[EUR][1000 genomes]
rs8070117	0.87[EUR][1000 genomes]
rs8070228	0.87[EUR][1000 genomes]
rs8078115	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9889514	0.87[EUR][1000 genomes]
rs9889534	0.87[EUR][1000 genomes]
rs9891717	0.87[EUR][1000 genomes]
rs9895298	0.87[EUR][1000 genomes]
rs9911308	0.85[EUR][1000 genomes]
rs9911809	0.87[EUR][1000 genomes]
rs9912257	0.87[EUR][1000 genomes]
rs9916699	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66778800	Weak transcription	HSMMtube	muscle
2	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:66770600-66775000	Enhancers	NHDF-Ad	bronchial
4	chr17:66770600-66776400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:66771200-66775200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr17:66772600-66777000	Enhancers	Fetal Muscle Leg	muscle
7	chr17:66773000-66775000	Enhancers	HUVEC	blood vessel
8	chr17:66773200-66780000	Weak transcription	Ovary	ovary
9	chr17:66773400-66775000	Enhancers	Fetal Lung	lung
10	chr17:66773400-66775200	Enhancers	Brain Substantia Nigra	brain
11	chr17:66773800-66775000	Flanking Active TSS	HepG2	liver
12	chr17:66773800-66775800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:66774000-66776200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr17:66774200-66775000	Enhancers	Brain Anterior Caudate	brain
15	chr17:66774200-66778800	Weak transcription	Colon Smooth Muscle	Colon
16	chr17:66774400-66775000	Enhancers	Adipose Nuclei	Adipose
17	chr17:66774400-66775000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr17:66774400-66775000	Enhancers	Right Atrium	heart
19	chr17:66774400-66775600	Enhancers	Brain Hippocampus Middle	brain
20	chr17:66774400-66778400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:66774400-66779000	Weak transcription	Osteobl	bone
22	chr17:66774600-66775000	Enhancers	Brain Cingulate Gyrus	brain
23	chr17:66774600-66775000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr17:66774600-66775200	Enhancers	Fetal Intestine Large	intestine
25	chr17:66774600-66775400	Enhancers	Fetal Intestine Small	intestine
26	chr17:66774600-66776400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr17:66774600-66779200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr17:66774800-66775000	Enhancers	Liver	Liver
29	chr17:66774800-66775200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr17:66774800-66778600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:66774800-66778600	Weak transcription	Brain Angular Gyrus	brain
32	chr17:66774800-66779600	Weak transcription	Psoas Muscle	Psoas
33	chr17:66774800-66780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr17:66774800-66780000	Weak transcription	Placenta	Placenta
35	chr17:66774800-66780000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr17:66774800-66780000	Weak transcription	NHLF	lung

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