Variant report

Variant	rs11869086
Chromosome Location	chr17:66782853-66782854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66773289..66774867-chr17:66781256..66783342,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11867173	0.91[EUR][1000 genomes]
rs11867232	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11871523	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16967199	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16967205	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16967208	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16973309	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16973316	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57197545	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58039149	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59913929	0.83[EUR][1000 genomes]
rs60553909	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6501742	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6501758	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6501759	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs68139244	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7211767	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7211958	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7215386	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7218023	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7223634	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72631340	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72631341	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72851039	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8069179	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8070095	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8070117	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8070228	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8078115	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9889514	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9889534	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9891717	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9895298	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9911308	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9911809	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9912257	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9916699	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66780400-66786600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:66780400-66786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr17:66780400-66787600	Weak transcription	Right Atrium	heart
5	chr17:66780800-66786400	Weak transcription	NHDF-Ad	bronchial
6	chr17:66780800-66786600	Weak transcription	Ovary	ovary
7	chr17:66781000-66784800	Weak transcription	HepG2	liver
8	chr17:66781000-66786400	Weak transcription	Adipose Nuclei	Adipose
9	chr17:66782200-66786400	Weak transcription	Fetal Lung	lung
10	chr17:66782200-66786400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr17:66782200-66786600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr17:66782400-66783000	Weak transcription	Psoas Muscle	Psoas
13	chr17:66782400-66783400	Weak transcription	Fetal Muscle Leg	muscle
14	chr17:66782800-66783600	Weak transcription	Liver	Liver

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