Variant report

Variant	rs16973316
Chromosome Location	chr17:66799630-66799631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11867232	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11869086	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16967199	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16967205	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16967208	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16973309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57197545	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58039149	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59913929	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60553909	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61192710	0.93[ASN][1000 genomes]
rs6501742	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6501758	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6501759	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139244	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7211767	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211958	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215386	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218023	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223634	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72631340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72631341	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851039	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8069179	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070095	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070117	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070228	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8078115	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9889514	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889534	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891717	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895298	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911308	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911809	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912257	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916699	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66788000-66805800	Weak transcription	Right Atrium	heart
2	chr17:66792600-66803200	Weak transcription	HepG2	liver
3	chr17:66797000-66803200	Weak transcription	Adipose Nuclei	Adipose
4	chr17:66797800-66800400	Enhancers	Ovary	ovary
5	chr17:66798200-66803600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:66799200-66799800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr17:66799200-66800000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr17:66799200-66800000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr17:66799200-66800000	Enhancers	Fetal Heart	heart
10	chr17:66799200-66800400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:66799200-66800400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:66799400-66799800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:66799400-66800000	Enhancers	Fetal Muscle Leg	muscle
14	chr17:66799400-66800400	Enhancers	Brain Hippocampus Middle	brain
15	chr17:66799400-66804000	Enhancers	Fetal Brain Male	brain
16	chr17:66799600-66800000	Enhancers	Brain Anterior Caudate	brain

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