Variant report

Variant	rs16967208
Chromosome Location	chr17:66780113-66780114
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11867173	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11867232	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869086	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11871523	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16967199	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16967205	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973309	0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16973316	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57197545	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58039149	0.82[EUR][1000 genomes]
rs60553909	0.82[EUR][1000 genomes]
rs6501742	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6501758	0.82[EUR][1000 genomes]
rs6501759	0.84[EUR][1000 genomes]
rs68139244	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7211767	0.82[EUR][1000 genomes]
rs7211958	0.82[EUR][1000 genomes]
rs7215386	0.82[EUR][1000 genomes]
rs7218023	0.82[EUR][1000 genomes]
rs7223634	0.82[EUR][1000 genomes]
rs72631340	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72631341	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72851039	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8069179	0.89[EUR][1000 genomes]
rs8070117	0.82[EUR][1000 genomes]
rs8070228	0.82[EUR][1000 genomes]
rs8078115	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9889514	0.82[EUR][1000 genomes]
rs9889534	0.82[EUR][1000 genomes]
rs9891717	0.82[EUR][1000 genomes]
rs9895298	0.82[EUR][1000 genomes]
rs9911308	0.81[EUR][1000 genomes]
rs9911809	0.82[EUR][1000 genomes]
rs9912257	0.82[EUR][1000 genomes]
rs9916699	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66775000-66781800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:66778400-66780800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr17:66778600-66780400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr17:66778800-66780600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:66778800-66781200	Enhancers	HSMMtube	muscle
7	chr17:66779000-66780200	Enhancers	Osteobl	bone
8	chr17:66779000-66780600	Enhancers	Fetal Muscle Leg	muscle
9	chr17:66779000-66780800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr17:66779200-66780400	Enhancers	HSMM	muscle
11	chr17:66779200-66780800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:66779400-66780200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr17:66779400-66781000	Enhancers	Adipose Nuclei	Adipose
14	chr17:66779600-66780400	Enhancers	Fetal Muscle Trunk	muscle
15	chr17:66779600-66780400	Enhancers	Left Ventricle	heart
16	chr17:66779600-66780400	Enhancers	Psoas Muscle	Psoas
17	chr17:66779600-66780800	Enhancers	NHDF-Ad	bronchial
18	chr17:66779800-66780200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr17:66779800-66780400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:66779800-66780800	Enhancers	Brain Substantia Nigra	brain
21	chr17:66779800-66781000	Enhancers	HepG2	liver
22	chr17:66780000-66780400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr17:66780000-66780400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr17:66780000-66780400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr17:66780000-66780400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr17:66780000-66780400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr17:66780000-66780400	Enhancers	Placenta	Placenta
28	chr17:66780000-66780400	Enhancers	Pancreas	Pancrea
29	chr17:66780000-66780400	Enhancers	Right Atrium	heart
30	chr17:66780000-66780400	Enhancers	NHLF	lung
31	chr17:66780000-66780600	Enhancers	Brain Angular Gyrus	brain
32	chr17:66780000-66780600	Enhancers	Fetal Intestine Large	intestine
33	chr17:66780000-66780600	Enhancers	Fetal Intestine Small	intestine
34	chr17:66780000-66780600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr17:66780000-66780800	Enhancers	Brain Anterior Caudate	brain
36	chr17:66780000-66780800	Enhancers	Brain Hippocampus Middle	brain
37	chr17:66780000-66780800	Enhancers	Ovary	ovary
38	chr17:66780000-66781200	Enhancers	Fetal Lung	lung
39	chr17:66780000-66781200	Enhancers	Skeletal Muscle Female	skeletal muscle

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