Variant report

Variant	rs11872
Chromosome Location	chr10:96997609-96997610
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96988601..96990244-chr10:96996425..96998002,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10128123	1.00[JPT][hapmap]
rs10218877	1.00[JPT][hapmap]
rs10509683	1.00[JPT][hapmap]
rs10509685	0.85[CHB][hapmap]
rs10882566	1.00[JPT][hapmap]
rs10882568	1.00[JPT][hapmap]
rs10882570	0.82[ASN][1000 genomes]
rs10882571	0.82[ASN][1000 genomes]
rs10882572	0.86[CHB][hapmap]
rs11188223	1.00[JPT][hapmap]
rs11188225	1.00[JPT][hapmap]
rs11188228	1.00[JPT][hapmap]
rs11188229	1.00[JPT][hapmap]
rs11188230	1.00[JPT][hapmap]
rs11188238	0.83[ASN][1000 genomes]
rs11188239	0.82[ASN][1000 genomes]
rs11188240	0.82[ASN][1000 genomes]
rs11596737	0.86[CHB][hapmap]
rs11596853	0.86[CHB][hapmap]
rs11598953	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11599546	0.82[ASN][1000 genomes]
rs12262878	1.00[JPT][hapmap]
rs12413028	0.86[CHB][hapmap]
rs12415795	0.86[CHB][hapmap]
rs12765981	0.85[CHB][hapmap]
rs12769370	0.85[CHB][hapmap]
rs12783947	0.83[ASN][1000 genomes]
rs16872	1.00[JPT][hapmap]
rs17453729	0.85[CHB][hapmap]
rs17453764	0.85[CHB][hapmap]
rs17453855	0.85[CHB][hapmap]
rs17524438	1.00[JPT][hapmap]
rs17526000	0.85[CHB][hapmap]
rs2449809	1.00[JPT][hapmap]
rs2478477	1.00[JPT][hapmap]
rs2478478	1.00[JPT][hapmap]
rs2478479	1.00[JPT][hapmap]
rs3210020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45510800	1.00[ASN][1000 genomes]
rs45569042	1.00[AFR][1000 genomes]
rs45605435	1.00[ASN][1000 genomes]
rs489807	1.00[JPT][hapmap]
rs509736	1.00[JPT][hapmap]
rs513661	1.00[JPT][hapmap]
rs589801	1.00[JPT][hapmap]
rs591157	1.00[JPT][hapmap]
rs591171	1.00[JPT][hapmap]
rs592055	1.00[JPT][hapmap]
rs594448	1.00[JPT][hapmap]
rs610046	1.00[JPT][hapmap]
rs611343	1.00[JPT][hapmap]
rs612490	1.00[JPT][hapmap]
rs613340	1.00[JPT][hapmap]
rs614682	1.00[JPT][hapmap]
rs626415	1.00[JPT][hapmap]
rs627173	1.00[JPT][hapmap]
rs628102	1.00[JPT][hapmap]
rs633345	1.00[JPT][hapmap]
rs637465	1.00[JPT][hapmap]
rs648695	1.00[JPT][hapmap]
rs659949	1.00[JPT][hapmap]
rs664093	1.00[JPT][hapmap]
rs672860	1.00[JPT][hapmap]
rs685607	1.00[JPT][hapmap]
rs688706	1.00[JPT][hapmap]
rs689207	1.00[JPT][hapmap]
rs695217	1.00[JPT][hapmap]
rs7089303	1.00[JPT][hapmap]
rs7909072	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7912686	0.85[CHB][hapmap]
rs7924214	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96990800-97005200	Weak transcription	Psoas Muscle	Psoas
2	chr10:96991000-96999800	Weak transcription	Fetal Lung	lung
3	chr10:96991000-97001200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:96991000-97001600	Weak transcription	Thymus	Thymus
5	chr10:96991000-97006400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:96991000-97006400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:96991000-97006600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:96991000-97006600	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:96991000-97006600	Weak transcription	Right Atrium	heart
10	chr10:96991000-97007600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:96991200-97000000	Weak transcription	Fetal Kidney	kidney
14	chr10:96991200-97000200	Weak transcription	Fetal Thymus	thymus
15	chr10:96991400-97019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:96991600-97001000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:96992000-97005000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:96992000-97005800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:96992200-97009000	Strong transcription	Liver	Liver
20	chr10:96992400-96998600	Strong transcription	Fetal Stomach	stomach
21	chr10:96992400-96998800	Strong transcription	Left Ventricle	heart
22	chr10:96992400-96999000	Strong transcription	Adipose Nuclei	Adipose
23	chr10:96992400-97000000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:96992400-97006200	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr10:96992600-96998600	Strong transcription	Lung	lung
26	chr10:96992600-97004000	Strong transcription	Fetal Intestine Large	intestine
27	chr10:96993200-96998800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:96994600-96998200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:96994600-96998600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:96994600-96998600	Strong transcription	Colonic Mucosa	Colon
31	chr10:96994800-96998000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:96994800-96998200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:96994800-96998600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:96994800-96998600	Strong transcription	Gastric	stomach
35	chr10:96994800-96998600	Genic enhancers	HMEC	breast
36	chr10:96995200-97002600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:96995400-96998000	Genic enhancers	NHLF	lung
38	chr10:96995400-96998600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:96995400-97000000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:96995600-96998000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:96995600-96998000	Genic enhancers	NHEK	skin
42	chr10:96995600-96998600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:96995800-96998600	Strong transcription	HepG2	liver
44	chr10:96996000-96998400	Genic enhancers	Rectal Mucosa Donor 31	rectum
45	chr10:96996200-96997800	Genic enhancers	HSMMtube	muscle
46	chr10:96996200-96998200	Strong transcription	Aorta	Aorta
47	chr10:96996200-96998400	Strong transcription	Esophagus	oesophagus
48	chr10:96996200-96998400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr10:96996200-96998600	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr10:96996200-96998600	Strong transcription	iPS-15b Cell Line	embryonic stem cell

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