Variant report

Variant	rs17453855
Chromosome Location	chr10:97030377-97030378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:
2	chr10:97026682..97029432-chr10:97030243..97031927,3	K562	blood:
3	chr10:97026682..97029432-chr10:97030243..97031927,2	K562	blood:
4	chr10:97029338..97031515-chr10:97049239..97051811,2	MCF-7	breast:
5	chr10:97028462..97030818-chr10:97048470..97050797,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10509685	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11872	0.85[CHB][hapmap]
rs12765981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12769370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12783709	0.92[ASN][1000 genomes]
rs17453729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17453764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17526000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1854338	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296964	1.00[CHB][hapmap]
rs34976996	0.92[ASN][1000 genomes]
rs35777379	0.89[ASN][1000 genomes]
rs35830045	0.84[ASN][1000 genomes]
rs45444597	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45447693	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45493292	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45498798	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45518536	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45533831	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45554238	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45555036	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45562941	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45569042	0.88[ASN][1000 genomes]
rs45591738	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45605435	0.89[AMR][1000 genomes]
rs7912686	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:97021000-97034400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:97021400-97036400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:97023200-97033000	Weak transcription	Psoas Muscle	Psoas
5	chr10:97024200-97033000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:97024400-97035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
8	chr10:97026400-97033200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:97026600-97032600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:97026800-97031600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:97026800-97032800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:97026800-97036000	Weak transcription	Fetal Lung	lung
13	chr10:97027000-97031400	Strong transcription	HepG2	liver
14	chr10:97027200-97033200	Weak transcription	Hela-S3	cervix
15	chr10:97027400-97032200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr10:97027400-97035800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:97027600-97030400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:97027800-97030800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:97027800-97031600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr10:97028000-97030600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:97028000-97031600	Strong transcription	HSMMtube	muscle
22	chr10:97028200-97030600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:97028200-97031000	Strong transcription	Fetal Stomach	stomach
24	chr10:97028400-97031600	Strong transcription	Primary B cells from cord blood	blood
25	chr10:97028600-97031400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:97028600-97032600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:97028600-97033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:97028600-97033200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:97028600-97033400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:97028600-97036200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:97028600-97036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:97028600-97038200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:97028800-97031400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr10:97028800-97032200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:97028800-97032600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:97028800-97032800	Weak transcription	Small Intestine	intestine
37	chr10:97028800-97033000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:97028800-97033000	Weak transcription	Aorta	Aorta
39	chr10:97028800-97036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:97029000-97030800	Strong transcription	A549	lung
41	chr10:97029000-97031200	Strong transcription	Fetal Intestine Large	intestine
42	chr10:97029000-97031200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr10:97029000-97031200	Weak transcription	Stomach Mucosa	stomach
44	chr10:97029000-97031600	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:97029000-97031800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:97029000-97032600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:97029000-97032600	Strong transcription	GM12878-XiMat	blood
48	chr10:97029000-97032600	Weak transcription	NHDF-Ad	bronchial
49	chr10:97029000-97032600	Weak transcription	NHLF	lung
50	chr10:97029000-97032800	Weak transcription	Fetal Heart	heart

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