Variant report

Variant	rs45533831
Chromosome Location	chr10:97028360-97028361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97026759..97029410-chr10:97032220..97034050,2	K562	blood:
2	chr10:97019128..97021944-chr10:97028081..97030163,2	MCF-7	breast:
3	chr10:97026792..97028543-chr10:97031366..97034212,2	MCF-7	breast:
4	chr10:97026682..97029432-chr10:97030243..97031927,2	K562	blood:
5	chr10:97026682..97029432-chr10:97030243..97031927,3	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509685	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12765981	0.88[ASN][1000 genomes]
rs12769370	0.88[ASN][1000 genomes]
rs12783709	0.88[ASN][1000 genomes]
rs17453729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17453764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17453855	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17526000	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1854338	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34976996	0.88[ASN][1000 genomes]
rs35777379	0.85[ASN][1000 genomes]
rs35830045	0.88[ASN][1000 genomes]
rs45444597	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45447693	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45493292	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45498798	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45518536	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs45554238	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45555036	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45562941	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45569042	0.91[ASN][1000 genomes]
rs45591738	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45605435	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7912686	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:97018800-97030000	Weak transcription	Thymus	Thymus
4	chr10:97021000-97034400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:97021400-97036400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:97023200-97029200	Genic enhancers	HMEC	breast
7	chr10:97023200-97033000	Weak transcription	Psoas Muscle	Psoas
8	chr10:97023800-97028800	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:97024200-97029000	Enhancers	Stomach Mucosa	stomach
10	chr10:97024200-97033000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:97024400-97035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97024600-97029800	Weak transcription	Osteobl	bone
13	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
14	chr10:97025400-97029200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:97026000-97028800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:97026000-97029000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:97026000-97029000	Enhancers	NH-A	brain
18	chr10:97026200-97028600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:97026200-97029200	Genic enhancers	K562	blood
20	chr10:97026400-97028600	Weak transcription	Fetal Thymus	thymus
21	chr10:97026400-97029200	Enhancers	HUVEC	blood vessel
22	chr10:97026400-97033200	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:97026600-97029000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:97026600-97029000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:97026600-97032600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:97026800-97031600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:97026800-97032800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:97026800-97036000	Weak transcription	Fetal Lung	lung
29	chr10:97027000-97031400	Strong transcription	HepG2	liver
30	chr10:97027200-97028800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:97027200-97033200	Weak transcription	Hela-S3	cervix
32	chr10:97027400-97029000	Genic enhancers	Duodenum Mucosa	Duodenum
33	chr10:97027400-97029600	Strong transcription	Liver	Liver
34	chr10:97027400-97032200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:97027400-97035800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:97027600-97028400	Strong transcription	NHDF-Ad	bronchial
37	chr10:97027600-97028600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:97027600-97028800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:97027600-97029000	Genic enhancers	Fetal Intestine Large	intestine
40	chr10:97027600-97029000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr10:97027600-97029000	Genic enhancers	A549	lung
42	chr10:97027600-97030400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:97027800-97028400	Genic enhancers	Primary B cells from cord blood	blood
44	chr10:97027800-97028400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr10:97027800-97028400	Genic enhancers	HSMM	muscle
46	chr10:97027800-97028800	Genic enhancers	Adipose Nuclei	Adipose
47	chr10:97027800-97029000	Enhancers	Fetal Heart	heart
48	chr10:97027800-97029200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:97027800-97029200	Genic enhancers	Fetal Intestine Small	intestine
50	chr10:97027800-97030800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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