Variant report

Variant	rs17526000
Chromosome Location	chr10:97027086-97027087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97026759..97029410-chr10:97032220..97034050,2	K562	blood:
2	chr10:97026792..97028543-chr10:97031366..97034212,2	MCF-7	breast:
3	chr10:97026682..97029432-chr10:97030243..97031927,2	K562	blood:
4	chr10:97004085..97006971-chr10:97024831..97027710,2	K562	blood:
5	chr10:97023872..97028051-chr10:97048144..97051430,5	K562	blood:
6	chr10:97025143..97028051-chr10:97049212..97051430,3	K562	blood:
7	chr10:97026682..97029432-chr10:97030243..97031927,3	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10509685	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11872	0.85[CHB][hapmap]
rs12765981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12769370	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12783709	0.85[ASN][1000 genomes]
rs17453729	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1854338	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296964	1.00[CHB][hapmap]
rs34976996	0.85[ASN][1000 genomes]
rs35777379	0.81[ASN][1000 genomes]
rs35830045	0.92[ASN][1000 genomes]
rs45444597	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45447693	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45493292	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45498798	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45518536	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45533831	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45554238	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45555036	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45562941	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45569042	0.95[ASN][1000 genomes]
rs45591738	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45605435	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7912686	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:97018800-97030000	Weak transcription	Thymus	Thymus
5	chr10:97021000-97034400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:97021400-97036400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:97021600-97027800	Weak transcription	HSMM	muscle
8	chr10:97022000-97027400	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr10:97023200-97028200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:97023200-97029200	Genic enhancers	HMEC	breast
11	chr10:97023200-97033000	Weak transcription	Psoas Muscle	Psoas
12	chr10:97023400-97028200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:97023800-97028800	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:97024200-97029000	Enhancers	Stomach Mucosa	stomach
15	chr10:97024200-97033000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:97024400-97027400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:97024400-97028200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:97024400-97028200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:97024400-97028200	Weak transcription	Gastric	stomach
20	chr10:97024400-97035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:97024600-97029800	Weak transcription	Osteobl	bone
22	chr10:97024800-97028000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:97024800-97028200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:97024800-97028200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
26	chr10:97025000-97027600	Weak transcription	NHDF-Ad	bronchial
27	chr10:97025000-97028000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:97025000-97028200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:97025400-97029200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:97026000-97027400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:97026000-97027400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:97026000-97027800	Enhancers	Adipose Nuclei	Adipose
33	chr10:97026000-97028800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
34	chr10:97026000-97029000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:97026000-97029000	Enhancers	NH-A	brain
36	chr10:97026200-97027200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:97026200-97027200	Enhancers	Hela-S3	cervix
38	chr10:97026200-97027400	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr10:97026200-97027600	Enhancers	Primary B cells from cord blood	blood
40	chr10:97026200-97028200	Weak transcription	Fetal Stomach	stomach
41	chr10:97026200-97028600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:97026200-97029200	Genic enhancers	K562	blood
43	chr10:97026400-97027400	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:97026400-97027400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:97026400-97027600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:97026400-97028200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:97026400-97028200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr10:97026400-97028200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:97026400-97028200	Weak transcription	Aorta	Aorta
50	chr10:97026400-97028200	Weak transcription	Colonic Mucosa	Colon

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