Variant report

Variant	rs45518536
Chromosome Location	chr10:97020219-97020220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97007090..97010166-chr10:97019600..97021879,3	MCF-7	breast:
2	chr10:97019128..97021944-chr10:97028081..97030163,2	MCF-7	breast:
3	chr10:97017870..97021906-chr10:97048495..97052362,4	MCF-7	breast:
4	chr10:97019690..97021827-chr10:97044842..97047086,2	MCF-7	breast:
5	chr10:97019193..97020732-chr10:97024741..97026574,2	K562	blood:
6	chr10:97018988..97023049-chr10:97048311..97051430,5	MCF-7	breast:
7	chr10:97010783..97013765-chr10:97019245..97021501,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509685	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12765981	0.81[ASN][1000 genomes]
rs12769370	0.81[ASN][1000 genomes]
rs12783709	0.81[ASN][1000 genomes]
rs17453729	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17453764	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17453855	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17526000	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1854338	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34976996	0.81[ASN][1000 genomes]
rs35830045	0.88[ASN][1000 genomes]
rs45444597	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45447693	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45493292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45498798	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45533831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs45554238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45555036	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45562941	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45569042	0.91[ASN][1000 genomes]
rs45591738	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45605435	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7912686	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
5	chr10:97007000-97026400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:97007600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:97007800-97020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:97009000-97020400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:97009200-97020600	Weak transcription	Fetal Lung	lung
10	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:97009800-97020400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:97009800-97020800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:97015400-97022000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:97016000-97020600	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr10:97016000-97020600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97016200-97022200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:97016200-97023000	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:97016400-97023000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:97016400-97026200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:97016600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:97017200-97020400	Strong transcription	HepG2	liver
23	chr10:97017200-97024400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:97017400-97020600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:97017400-97022000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:97017600-97020600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:97017600-97022200	Strong transcription	Primary B cells from cord blood	blood
28	chr10:97018000-97020400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:97018000-97020400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:97018000-97020600	Strong transcription	GM12878-XiMat	blood
31	chr10:97018000-97024000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:97018200-97020400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:97018200-97020600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:97018600-97020800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:97018800-97023800	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr10:97018800-97030000	Weak transcription	Thymus	Thymus
37	chr10:97019200-97020400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:97019200-97020600	Genic enhancers	HMEC	breast
39	chr10:97019200-97023400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:97019200-97023600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:97019200-97024800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:97019400-97021400	Genic enhancers	Duodenum Mucosa	Duodenum
43	chr10:97019400-97026400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:97019600-97020400	Genic enhancers	NH-A	brain
45	chr10:97019600-97020600	Weak transcription	Small Intestine	intestine
46	chr10:97019600-97020600	Genic enhancers	NHEK	skin
47	chr10:97019600-97024800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:97019800-97020400	Genic enhancers	Esophagus	oesophagus
49	chr10:97019800-97020600	Strong transcription	Colonic Mucosa	Colon
50	chr10:97019800-97020600	Strong transcription	Fetal Thymus	thymus

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