Variant report

Variant	rs45493292
Chromosome Location	chr10:97019278-97019279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97019128..97021944-chr10:97028081..97030163,2	MCF-7	breast:
2	chr10:97017870..97021906-chr10:97048495..97052362,4	MCF-7	breast:
3	chr10:97019193..97020732-chr10:97024741..97026574,2	K562	blood:
4	chr10:97018988..97023049-chr10:97048311..97051430,5	MCF-7	breast:
5	chr10:97010783..97013765-chr10:97019245..97021501,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509685	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765981	0.85[ASN][1000 genomes]
rs12769370	0.85[ASN][1000 genomes]
rs12783709	0.85[ASN][1000 genomes]
rs17453729	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453764	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453855	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17526000	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1854338	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34976996	0.85[ASN][1000 genomes]
rs35777379	0.81[ASN][1000 genomes]
rs35830045	0.92[ASN][1000 genomes]
rs45444597	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45447693	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45498798	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45518536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45533831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45554238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45555036	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45562941	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45569042	0.95[ASN][1000 genomes]
rs45591738	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45605435	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7912686	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
5	chr10:97006400-97019600	Weak transcription	K562	blood
6	chr10:97007000-97026400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:97007600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:97007800-97020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:97008000-97019400	Weak transcription	Placenta	Placenta
10	chr10:97008000-97020200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:97008600-97019800	Weak transcription	HSMM	muscle
12	chr10:97008800-97019800	Weak transcription	Fetal Thymus	thymus
13	chr10:97009000-97020400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:97009200-97019600	Weak transcription	Esophagus	oesophagus
15	chr10:97009200-97020200	Weak transcription	Pancreas	Pancrea
16	chr10:97009200-97020600	Weak transcription	Fetal Lung	lung
17	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:97009600-97019600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:97009800-97020000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:97009800-97020000	Weak transcription	Fetal Heart	heart
21	chr10:97009800-97020400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:97009800-97020800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:97012000-97019800	Weak transcription	Colonic Mucosa	Colon
24	chr10:97012200-97019600	Weak transcription	Fetal Stomach	stomach
25	chr10:97012200-97019800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:97012200-97020200	Weak transcription	Psoas Muscle	Psoas
27	chr10:97014400-97020200	Weak transcription	Stomach Mucosa	stomach
28	chr10:97014600-97019800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:97014800-97019800	Weak transcription	HUVEC	blood vessel
30	chr10:97015400-97020200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr10:97015400-97022000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr10:97016000-97019600	Strong transcription	NHEK	skin
33	chr10:97016000-97020000	Strong transcription	Fetal Intestine Large	intestine
34	chr10:97016000-97020200	Strong transcription	Liver	Liver
35	chr10:97016000-97020600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr10:97016000-97020600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr10:97016200-97019400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr10:97016200-97022200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:97016200-97023000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:97016400-97019800	Weak transcription	NHDF-Ad	bronchial
41	chr10:97016400-97020000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:97016400-97023000	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:97016400-97026200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr10:97016600-97019400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:97016600-97019600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:97016600-97020200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:97016600-97020600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:97017000-97020000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:97017200-97019400	Strong transcription	A549	lung

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