Variant report

Variant	rs10882566
Chromosome Location	chr10:96954732-96954733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10128123	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs10218877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509682	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509683	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10786186	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786187	0.93[ASN][1000 genomes]
rs10786188	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786189	0.93[ASN][1000 genomes]
rs10786190	0.93[ASN][1000 genomes]
rs10882542	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882543	0.93[ASN][1000 genomes]
rs10882546	0.93[ASN][1000 genomes]
rs10882551	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882562	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882564	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882565	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882568	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs10882569	0.86[ASN][1000 genomes]
rs11188189	0.93[ASN][1000 genomes]
rs11188190	0.93[ASN][1000 genomes]
rs11188192	0.93[ASN][1000 genomes]
rs11188196	0.93[ASN][1000 genomes]
rs11188197	0.93[ASN][1000 genomes]
rs11188200	0.93[ASN][1000 genomes]
rs11188214	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188219	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188227	0.93[ASN][1000 genomes]
rs11188228	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs11188229	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11188230	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11572093	0.82[CHB][hapmap]
rs11596737	0.84[CEU][hapmap]
rs11596853	0.82[CEU][hapmap]
rs11598953	1.00[JPT][hapmap]
rs11599884	0.93[ASN][1000 genomes]
rs11872	1.00[JPT][hapmap]
rs12245722	0.93[ASN][1000 genomes]
rs12261370	0.93[ASN][1000 genomes]
rs12262878	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12266386	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12354433	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413028	0.96[CEU][hapmap]
rs12415795	0.96[CEU][hapmap]
rs12769577	0.86[ASN][1000 genomes]
rs12769820	0.93[ASN][1000 genomes]
rs12782731	0.93[ASN][1000 genomes]
rs1341164	0.82[CHB][hapmap]
rs1575930	0.93[ASN][1000 genomes]
rs16872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17451604	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17524438	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1934955	0.82[CHB][hapmap]
rs1934957	0.82[CHB][hapmap]
rs1934982	0.82[CHB][hapmap]
rs1934983	0.82[CHB][hapmap]
rs2071426	0.85[CHB][hapmap]
rs2185571	0.82[CHB][hapmap]
rs2449809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2449810	0.93[ASN][1000 genomes]
rs2478477	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2478478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2478479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2478480	0.86[ASN][1000 genomes]
rs2901829	0.93[ASN][1000 genomes]
rs34999658	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35306243	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35999600	0.93[ASN][1000 genomes]
rs4119640	0.81[ASN][1000 genomes]
rs4532969	0.93[ASN][1000 genomes]
rs489807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs509736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs513661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs519833	0.86[ASN][1000 genomes]
rs585381	0.93[ASN][1000 genomes]
rs589801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs591157	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs591171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs592055	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs593207	0.86[ASN][1000 genomes]
rs594402	0.93[ASN][1000 genomes]
rs594448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs595420	0.86[ASN][1000 genomes]
rs595478	0.86[ASN][1000 genomes]
rs600929	0.86[ASN][1000 genomes]
rs602941	0.86[ASN][1000 genomes]
rs604022	0.93[ASN][1000 genomes]
rs604373	0.93[ASN][1000 genomes]
rs610046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs610579	0.89[ASN][1000 genomes]
rs610837	0.86[ASN][1000 genomes]
rs611343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs611371	0.86[ASN][1000 genomes]
rs611416	0.93[ASN][1000 genomes]
rs612490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs613340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs614682	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs620196	0.93[ASN][1000 genomes]
rs621299	0.86[ASN][1000 genomes]
rs626415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs627173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs627719	0.86[ASN][1000 genomes]
rs628102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs631107	0.80[ASN][1000 genomes]
rs632113	0.93[ASN][1000 genomes]
rs632361	0.86[ASN][1000 genomes]
rs632979	0.82[ASN][1000 genomes]
rs633345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs634269	0.93[ASN][1000 genomes]
rs637465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs637724	0.93[ASN][1000 genomes]
rs637939	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs638895	0.93[ASN][1000 genomes]
rs641198	0.93[ASN][1000 genomes]
rs644437	0.93[ASN][1000 genomes]
rs646845	0.93[ASN][1000 genomes]
rs648638	0.93[ASN][1000 genomes]
rs648695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs649770	0.83[ASN][1000 genomes]
rs6583967	0.82[CHB][hapmap]
rs6583980	0.93[ASN][1000 genomes]
rs659949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs660026	0.86[ASN][1000 genomes]
rs663473	0.93[ASN][1000 genomes]
rs664093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs666679	0.93[ASN][1000 genomes]
rs666786	0.93[ASN][1000 genomes]
rs667499	0.82[ASN][1000 genomes]
rs669360	0.86[ASN][1000 genomes]
rs672428	0.93[ASN][1000 genomes]
rs672860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs675332	0.93[ASN][1000 genomes]
rs678165	0.93[ASN][1000 genomes]
rs679025	0.93[ASN][1000 genomes]
rs680918	0.93[ASN][1000 genomes]
rs682477	0.93[ASN][1000 genomes]
rs685607	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs688706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs689207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs695217	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs701886	0.86[ASN][1000 genomes]
rs7079861	0.93[ASN][1000 genomes]
rs7082502	0.93[ASN][1000 genomes]
rs7087492	0.93[ASN][1000 genomes]
rs7087618	0.93[ASN][1000 genomes]
rs7089303	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7094658	0.93[ASN][1000 genomes]
rs752415	0.93[ASN][1000 genomes]
rs752416	0.93[ASN][1000 genomes]
rs752417	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907627	0.93[ASN][1000 genomes]
rs7907827	0.93[ASN][1000 genomes]
rs7909072	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs7921561	0.93[ASN][1000 genomes]
rs815250	0.86[ASN][1000 genomes]
rs815265	0.93[ASN][1000 genomes]
rs815266	0.93[ASN][1000 genomes]
rs815267	0.82[ASN][1000 genomes]
rs815268	0.93[ASN][1000 genomes]
rs815269	0.93[ASN][1000 genomes]
rs815270	0.93[ASN][1000 genomes]
rs943313	0.93[ASN][1000 genomes]
rs943315	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv820063	chr10:96954277-96954895	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96943400-96955200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:96944000-96954800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:96944000-96955200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96944000-96955800	Weak transcription	Aorta	Aorta
5	chr10:96944000-96961400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:96944200-96990400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:96948600-96955200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:96949800-96980600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:96952800-96974600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:96953800-96956200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:96953800-96956400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:96953800-96956800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:96953800-96956800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:96954000-96955800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:96954200-96955400	Enhancers	HepG2	liver
16	chr10:96954400-96954800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:96954400-96955800	Weak transcription	Thymus	Thymus
18	chr10:96954400-96956400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:96954600-96955000	Active TSS	Fetal Thymus	thymus
20	chr10:96954600-96955000	Weak transcription	Pancreas	Pancrea
21	chr10:96954600-96955200	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:96954600-96955600	Weak transcription	HSMMtube	muscle
23	chr10:96954600-96957000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:96954600-96957000	Enhancers	Primary neutrophils fromperipheralblood	blood

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