Variant report

Variant	rs11875285
Chromosome Location	chr18:13371246-13371247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13370761..13372508-chr18:13373066..13375363,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11080643	1.00[EUR][1000 genomes]
rs11873077	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875382	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875398	1.00[EUR][1000 genomes]
rs11875421	1.00[EUR][1000 genomes]
rs11877708	1.00[EUR][1000 genomes]
rs12232719	1.00[EUR][1000 genomes]
rs12232739	1.00[EUR][1000 genomes]
rs1961389	1.00[EUR][1000 genomes]
rs28433080	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7230254	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085411	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085978	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8089252	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8092586	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8092824	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8099239	1.00[EUR][1000 genomes]
rs9945445	1.00[EUR][1000 genomes]
rs9950249	1.00[EUR][1000 genomes]
rs9957082	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9957817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960178	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13354200-13371800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:13354200-13372000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr18:13355000-13374200	Weak transcription	Dnd41	blood
5	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
6	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
7	chr18:13362000-13374600	Weak transcription	Fetal Muscle Leg	muscle
8	chr18:13364200-13371400	Enhancers	Fetal Thymus	thymus
9	chr18:13365200-13372200	Weak transcription	Brain Angular Gyrus	brain
10	chr18:13365800-13376400	Weak transcription	Liver	Liver
11	chr18:13366800-13374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:13367200-13372200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:13367200-13372200	Weak transcription	Brain Substantia Nigra	brain
14	chr18:13367200-13374600	Weak transcription	Brain Hippocampus Middle	brain
15	chr18:13367800-13371800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr18:13367800-13372600	Weak transcription	Lung	lung
17	chr18:13367800-13374800	Weak transcription	Right Atrium	heart
18	chr18:13368200-13372000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:13368600-13371400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr18:13368800-13372200	Weak transcription	Brain Anterior Caudate	brain
21	chr18:13369000-13373600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr18:13369200-13373000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr18:13369200-13374600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr18:13369400-13372000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr18:13369600-13374600	Weak transcription	Gastric	stomach
26	chr18:13370000-13371600	Genic enhancers	Thymus	Thymus
27	chr18:13370000-13374600	Weak transcription	Esophagus	oesophagus
28	chr18:13370000-13375000	Weak transcription	Fetal Heart	heart
29	chr18:13370000-13382200	Enhancers	Fetal Brain Male	brain
30	chr18:13370200-13371400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr18:13370200-13371400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr18:13370200-13371400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr18:13370200-13371800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr18:13370200-13372000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr18:13370400-13371400	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr18:13370400-13371800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr18:13370400-13371800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr18:13370400-13372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr18:13370400-13372000	Weak transcription	Colonic Mucosa	Colon
40	chr18:13370400-13372200	Weak transcription	Fetal Intestine Small	intestine
41	chr18:13370400-13372800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr18:13370400-13374600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr18:13370400-13374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr18:13370400-13374800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr18:13370400-13374800	Weak transcription	A549	lung
46	chr18:13370400-13375000	Weak transcription	Fetal Stomach	stomach
47	chr18:13370600-13371800	Weak transcription	Primary T cells from cord blood	blood
48	chr18:13370600-13371800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr18:13370600-13372000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr18:13370600-13372000	Weak transcription	Rectal Mucosa Donor 31	rectum

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