Variant report

Variant	rs11875398
Chromosome Location	chr18:13371840-13371841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13370761..13372508-chr18:13373066..13375363,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11080643	1.00[EUR][1000 genomes]
rs11873077	1.00[EUR][1000 genomes]
rs11875285	1.00[EUR][1000 genomes]
rs11875382	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11875421	1.00[EUR][1000 genomes]
rs11877708	1.00[EUR][1000 genomes]
rs12232719	1.00[EUR][1000 genomes]
rs12232739	1.00[EUR][1000 genomes]
rs1961389	1.00[EUR][1000 genomes]
rs28433080	1.00[EUR][1000 genomes]
rs7230254	1.00[EUR][1000 genomes]
rs8085411	1.00[EUR][1000 genomes]
rs8085540	1.00[EUR][1000 genomes]
rs8085978	1.00[EUR][1000 genomes]
rs8089252	1.00[EUR][1000 genomes]
rs8092586	1.00[EUR][1000 genomes]
rs8092824	1.00[EUR][1000 genomes]
rs8099239	1.00[EUR][1000 genomes]
rs9945445	1.00[EUR][1000 genomes]
rs9950249	1.00[EUR][1000 genomes]
rs9957082	1.00[EUR][1000 genomes]
rs9957817	1.00[EUR][1000 genomes]
rs9960178	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13354200-13372000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr18:13355000-13374200	Weak transcription	Dnd41	blood
4	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
5	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
6	chr18:13362000-13374600	Weak transcription	Fetal Muscle Leg	muscle
7	chr18:13365200-13372200	Weak transcription	Brain Angular Gyrus	brain
8	chr18:13365800-13376400	Weak transcription	Liver	Liver
9	chr18:13366800-13374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:13367200-13372200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr18:13367200-13372200	Weak transcription	Brain Substantia Nigra	brain
12	chr18:13367200-13374600	Weak transcription	Brain Hippocampus Middle	brain
13	chr18:13367800-13372600	Weak transcription	Lung	lung
14	chr18:13367800-13374800	Weak transcription	Right Atrium	heart
15	chr18:13368200-13372000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:13368800-13372200	Weak transcription	Brain Anterior Caudate	brain
17	chr18:13369000-13373600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr18:13369200-13373000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr18:13369200-13374600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr18:13369400-13372000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr18:13369600-13374600	Weak transcription	Gastric	stomach
22	chr18:13370000-13374600	Weak transcription	Esophagus	oesophagus
23	chr18:13370000-13375000	Weak transcription	Fetal Heart	heart
24	chr18:13370000-13382200	Enhancers	Fetal Brain Male	brain
25	chr18:13370200-13372000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr18:13370400-13372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr18:13370400-13372000	Weak transcription	Colonic Mucosa	Colon
28	chr18:13370400-13372200	Weak transcription	Fetal Intestine Small	intestine
29	chr18:13370400-13372800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr18:13370400-13374600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr18:13370400-13374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr18:13370400-13374800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr18:13370400-13374800	Weak transcription	A549	lung
34	chr18:13370400-13375000	Weak transcription	Fetal Stomach	stomach
35	chr18:13370600-13372000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr18:13370600-13372000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr18:13370600-13372200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr18:13370600-13372200	Weak transcription	HSMMtube	muscle
39	chr18:13370600-13374200	Weak transcription	Right Ventricle	heart
40	chr18:13370600-13374600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr18:13370600-13374600	Weak transcription	Colon Smooth Muscle	Colon
42	chr18:13370600-13374600	Weak transcription	NH-A	brain
43	chr18:13370600-13375000	Weak transcription	Stomach Mucosa	stomach
44	chr18:13370800-13372200	Weak transcription	Small Intestine	intestine
45	chr18:13371000-13372600	Enhancers	Brain Germinal Matrix	brain
46	chr18:13371000-13373000	Enhancers	Primary B cells from peripheral blood	blood
47	chr18:13371200-13372200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr18:13371200-13372800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr18:13371200-13372800	Enhancers	Spleen	Spleen
50	chr18:13371200-13373000	Enhancers	Primary B cells from cord blood	blood

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