Variant report

Variant	rs8089252
Chromosome Location	chr18:13354105-13354106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11080643	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11873077	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11875285	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875382	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875398	1.00[EUR][1000 genomes]
rs11875421	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11877708	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232719	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12232739	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1961389	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7230254	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085411	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8085540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8085978	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086741	0.90[ASN][1000 genomes]
rs8092586	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8092824	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099239	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099805	0.90[ASN][1000 genomes]
rs9945445	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9950249	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9957082	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9957817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9960178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13352400-13355000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr18:13352600-13354200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr18:13352600-13354400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr18:13352800-13354400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr18:13353000-13354200	Enhancers	Primary hematopoietic stem cells	blood
7	chr18:13353000-13354200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr18:13353000-13354200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr18:13353000-13354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr18:13353000-13355000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr18:13353200-13354200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr18:13353200-13354200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr18:13353200-13354200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr18:13353200-13354200	Enhancers	Thymus	Thymus
15	chr18:13353200-13354800	Enhancers	Fetal Thymus	thymus
16	chr18:13353200-13355000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:13353200-13355000	Enhancers	Aorta	Aorta
18	chr18:13353600-13354200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr18:13353600-13356000	Weak transcription	Liver	Liver
20	chr18:13353800-13354200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr18:13353800-13354800	Weak transcription	Left Ventricle	heart
22	chr18:13353800-13355000	Enhancers	Dnd41	blood
23	chr18:13353800-13355400	Enhancers	Primary T cells from cord blood	blood
24	chr18:13353800-13355400	Weak transcription	Adipose Nuclei	Adipose
25	chr18:13353800-13359000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr18:13353800-13359000	Weak transcription	Primary B cells from cord blood	blood
27	chr18:13353800-13359000	Weak transcription	Psoas Muscle	Psoas
28	chr18:13353800-13359200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:13353800-13359200	Weak transcription	Brain Anterior Caudate	brain
30	chr18:13353800-13361000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr18:13353800-13361600	Weak transcription	Right Atrium	heart

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