Variant report

Variant	rs8085411
Chromosome Location	chr18:13353064-13353065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11080643	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11873077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11875285	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875382	1.00[EUR][1000 genomes]
rs11875398	1.00[EUR][1000 genomes]
rs11875421	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11877708	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12232719	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12232739	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1961389	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28433080	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7230254	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8085540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085978	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8086741	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8089252	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8092586	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8092824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8099239	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8099805	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9945445	1.00[EUR][1000 genomes]
rs9950249	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9957082	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9957817	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9960178	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13349200-13353200	Weak transcription	Thymus	Thymus
2	chr18:13351600-13353200	Enhancers	Dnd41	blood
3	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr18:13352400-13353200	Enhancers	Primary T cells from cord blood	blood
5	chr18:13352400-13353600	Enhancers	Liver	Liver
6	chr18:13352400-13355000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr18:13352600-13354200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr18:13352600-13354400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr18:13352800-13353400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr18:13352800-13354000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr18:13352800-13354400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr18:13353000-13353200	Enhancers	Fetal Brain Male	brain
13	chr18:13353000-13353800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr18:13353000-13353800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr18:13353000-13354000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr18:13353000-13354200	Enhancers	Primary hematopoietic stem cells	blood
17	chr18:13353000-13354200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr18:13353000-13354200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr18:13353000-13354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr18:13353000-13355000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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