The 2.0 version of rSNPBase

Variant report

Variant rs11879632
Chromosome Location chr19:44625542-44625543
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44618200-44635000 Weak transcription Stomach Mucosa stomach
2 chr19:44618400-44629200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr19:44618600-44631400 Weak transcription NHEK skin
4 chr19:44618600-44635000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr19:44618800-44635000 Weak transcription HMEC breast
6 chr19:44619000-44633600 Weak transcription HUVEC blood vessel
7 chr19:44619600-44625600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr19:44619600-44625800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr19:44619600-44626000 Strong transcription Fetal Adrenal Gland Adrenal Gland
10 chr19:44619600-44626200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr19:44619600-44627200 Strong transcription Primary T helper cells fromperipheralblood blood
12 chr19:44619600-44629200 Strong transcription Brain Inferior Temporal Lobe brain
13 chr19:44619600-44630400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr19:44619600-44633200 Strong transcription Skeletal Muscle Female skeletal muscle
15 chr19:44619600-44637200 Strong transcription Cortex derived primary cultured neurospheres brain
16 chr19:44619600-44638600 ZNF genes & repeats Liver Liver
17 chr19:44619800-44625600 Strong transcription Fetal Muscle Trunk muscle
18 chr19:44619800-44625800 Strong transcription Left Ventricle heart
19 chr19:44619800-44625800 Strong transcription Ovary ovary
20 chr19:44619800-44626600 Strong transcription Primary T cells from cord blood blood
21 chr19:44619800-44627000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr19:44619800-44627600 Strong transcription Primary T helper cells PMA-I stimulated --
23 chr19:44619800-44629200 Strong transcription Fetal Muscle Leg muscle
24 chr19:44619800-44630600 Strong transcription Duodenum Mucosa Duodenum
25 chr19:44619800-44635000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr19:44620000-44634600 Strong transcription Brain Hippocampus Middle brain
27 chr19:44620000-44635400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr19:44620200-44625800 Strong transcription Primary T cells fromperipheralblood blood
29 chr19:44620200-44629000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr19:44620400-44625600 Strong transcription Primary T regulatory cells fromperipheralblood blood
31 chr19:44620400-44625800 Strong transcription Primary neutrophils fromperipheralblood blood
32 chr19:44620400-44626200 Strong transcription Fetal Intestine Large intestine
33 chr19:44620400-44635000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr19:44620400-44635000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr19:44621200-44629000 Strong transcription Colon Smooth Muscle Colon
36 chr19:44621200-44630200 Strong transcription Primary T helper naive cells fromperipheralblood blood
37 chr19:44621400-44625800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
38 chr19:44621400-44625800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr19:44621400-44627000 Strong transcription Primary B cells from cord blood blood
40 chr19:44621600-44631000 Strong transcription Primary B cells from peripheral blood blood
41 chr19:44622400-44627800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
42 chr19:44622800-44628600 Weak transcription K562 blood
43 chr19:44622800-44636800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr19:44622800-44645000 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr19:44623200-44628400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr19:44623400-44637200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
47 chr19:44623400-44637800 ZNF genes & repeats Adipose Nuclei Adipose
48 chr19:44623400-44638800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr19:44623600-44633600 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr19:44623800-44627800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015