The 2.0 version of rSNPBase

Variant report

Variant rs16978891
Chromosome Location chr19:44770055-44770056
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44730000-44775600 ZNF genes & repeats Liver Liver
2 chr19:44764600-44771000 Weak transcription Psoas Muscle Psoas
3 chr19:44764600-44778200 Weak transcription HSMMtube muscle
4 chr19:44764800-44771200 Weak transcription Thymus Thymus
5 chr19:44764800-44777600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr19:44764800-44777600 Weak transcription Placenta Placenta
7 chr19:44764800-44782000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr19:44765000-44770200 Weak transcription Fetal Intestine Small intestine
9 chr19:44765000-44770200 Weak transcription Fetal Stomach stomach
10 chr19:44765000-44770200 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr19:44765000-44770400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr19:44765000-44770400 Weak transcription Brain Cingulate Gyrus brain
13 chr19:44765000-44770800 Weak transcription Fetal Muscle Leg muscle
14 chr19:44765000-44771000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr19:44765000-44771200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr19:44765000-44772400 Weak transcription A549 lung
17 chr19:44765000-44772600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr19:44765000-44773400 Weak transcription H9 Cell Line embryonic stem cell
19 chr19:44765000-44774800 Weak transcription Fetal Lung lung
20 chr19:44765000-44774800 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr19:44765000-44775400 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr19:44765000-44777400 Weak transcription H1 Cell Line embryonic stem cell
23 chr19:44765000-44777400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr19:44765000-44777400 Weak transcription Brain Inferior Temporal Lobe brain
25 chr19:44765000-44777400 Weak transcription Fetal Heart heart
26 chr19:44765000-44777600 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr19:44765000-44777600 Weak transcription Right Ventricle heart
28 chr19:44765000-44778000 Weak transcription Fetal Brain Male brain
29 chr19:44765200-44777000 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr19:44765200-44777600 Weak transcription Dnd41 blood
31 chr19:44765400-44770200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr19:44765400-44770200 Weak transcription Left Ventricle heart
33 chr19:44765400-44771000 Weak transcription Brain Anterior Caudate brain
34 chr19:44765400-44771400 Weak transcription Fetal Intestine Large intestine
35 chr19:44765400-44773600 Weak transcription HepG2 liver
36 chr19:44765400-44777600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr19:44767200-44770200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr19:44767200-44770200 Weak transcription Ovary ovary
39 chr19:44767600-44777400 Weak transcription Brain Angular Gyrus brain
40 chr19:44767800-44770200 Weak transcription Brain Substantia Nigra brain
41 chr19:44768400-44770200 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr19:44769200-44773200 Strong transcription Brain Germinal Matrix brain
43 chr19:44769400-44770200 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr19:44769600-44770200 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr19:44769600-44772200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr19:44769600-44772600 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr19:44769800-44771400 ZNF genes & repeats Adipose Nuclei Adipose
48 chr19:44769800-44772200 Strong transcription Fetal Muscle Trunk muscle
49 chr19:44769800-44775200 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
50 chr19:44769800-44775600 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015