Variant report

Variant	rs73934502
Chromosome Location	chr19:44745935-44745936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44745585..44747611-chr19:44762320..44764226,2	K562	blood:

Variant related genes	Relation type
ENSG00000159915	Chromatin interaction

rs_ID	r²[population]
rs11879632	1.00[AMR][1000 genomes]
rs11882412	1.00[AMR][1000 genomes]
rs11882809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16978891	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55947208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58609834	1.00[AMR][1000 genomes]
rs59252234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59559013	1.00[AMR][1000 genomes]
rs60279717	1.00[AMR][1000 genomes]
rs60800862	1.00[AMR][1000 genomes]
rs73932780	1.00[AMR][1000 genomes]
rs73932818	1.00[AMR][1000 genomes]
rs73932830	1.00[AMR][1000 genomes]
rs73934451	1.00[AMR][1000 genomes]
rs73934470	1.00[AMR][1000 genomes]
rs73934471	1.00[AMR][1000 genomes]
rs73934496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
7	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
8	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr19:44741200-44748000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:44741200-44748000	Weak transcription	Fetal Brain Male	brain
11	chr19:44741400-44751800	Weak transcription	HSMM	muscle
12	chr19:44741800-44748600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:44742000-44746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr19:44742200-44746600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
16	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:44743600-44746200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr19:44743600-44747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr19:44744200-44747600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:44744400-44746200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr19:44744600-44747400	Weak transcription	Left Ventricle	heart
22	chr19:44745000-44747200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links