Variant report

Variant	rs11882809
Chromosome Location	chr19:44858391-44858392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16978891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55947208	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56221148	1.00[AMR][1000 genomes]
rs58609834	1.00[AMR][1000 genomes]
rs59252234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60279717	1.00[AMR][1000 genomes]
rs60800862	1.00[AMR][1000 genomes]
rs73934451	1.00[AMR][1000 genomes]
rs73934470	1.00[AMR][1000 genomes]
rs73934471	1.00[AMR][1000 genomes]
rs73934496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv963093	chr19:44850276-44876742	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv912111	chr19:44852134-44902190	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv579855	chr19:44852134-44930348	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv515911	chr19:44852134-44935019	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv912112	chr19:44853707-45011727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv579856	chr19:44855757-44899820	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44840800-44860000	Weak transcription	NHDF-Ad	bronchial
2	chr19:44844200-44859600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr19:44844200-44859800	Weak transcription	Osteobl	bone
4	chr19:44845000-44860000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:44845200-44860000	Weak transcription	HSMM	muscle
6	chr19:44845400-44859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:44849600-44859800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr19:44850400-44860000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:44850400-44860200	Weak transcription	Left Ventricle	heart
10	chr19:44851400-44860400	Weak transcription	Aorta	Aorta
11	chr19:44852600-44859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:44854400-44860000	Weak transcription	Ovary	ovary
13	chr19:44854800-44860000	Weak transcription	Pancreas	Pancrea
14	chr19:44855000-44859600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr19:44855400-44860000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:44855600-44860000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr19:44855800-44860000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr19:44856200-44859200	Weak transcription	HMEC	breast
19	chr19:44856600-44859800	Weak transcription	Brain Anterior Caudate	brain
20	chr19:44857000-44859800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:44857800-44859800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr19:44858000-44859200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr19:44858000-44859200	ZNF genes & repeats	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links