Variant report

Variant	rs11884094
Chromosome Location	chr18:40021683-40021684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10206363	0.87[ASN][1000 genomes]
rs1037509	0.90[ASN][1000 genomes]
rs11125578	0.93[ASN][1000 genomes]
rs12999476	0.87[ASN][1000 genomes]
rs13399420	0.88[ASN][1000 genomes]
rs13412745	0.84[ASN][1000 genomes]
rs1454425	0.88[ASN][1000 genomes]
rs4671245	0.89[ASN][1000 genomes]
rs4672046	0.89[ASN][1000 genomes]
rs6545500	0.92[ASN][1000 genomes]
rs6545501	0.93[ASN][1000 genomes]
rs6719033	0.88[ASN][1000 genomes]
rs6724457	0.87[ASN][1000 genomes]
rs7567744	0.92[ASN][1000 genomes]
rs7570226	0.87[ASN][1000 genomes]
rs7570299	0.87[ASN][1000 genomes]
rs7593229	0.87[ASN][1000 genomes]
rs897095	0.87[ASN][1000 genomes]
rs897096	0.87[ASN][1000 genomes]
rs897097	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11884094	PNPT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40018200-40022200	Weak transcription	HSMMtube	muscle
2	chr18:40018400-40024200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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