Variant report
Variant | rs6545501 |
---|---|
Chromosome Location | chr2:55695820-55695821 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:55687006..55688643-chr2:55695301..55697827,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10206363 | 0.88[ASN][1000 genomes] |
rs1037509 | 0.87[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
rs11125578 | 0.93[ASN][1000 genomes] |
rs11884094 | 0.93[ASN][1000 genomes] |
rs12999476 | 0.86[ASN][1000 genomes] |
rs13399420 | 0.89[ASN][1000 genomes] |
rs13412745 | 0.85[ASN][1000 genomes] |
rs1454425 | 0.87[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes] |
rs4671245 | 0.89[ASN][1000 genomes] |
rs4672046 | 0.89[ASN][1000 genomes] |
rs6545500 | 0.94[ASN][1000 genomes] |
rs6719033 | 0.83[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes] |
rs6724457 | 0.89[ASN][1000 genomes] |
rs7567744 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes] |
rs7570226 | 0.91[CHB][hapmap];0.88[ASN][1000 genomes] |
rs7570299 | 0.91[CHB][hapmap];0.88[ASN][1000 genomes] |
rs7593229 | 0.91[CHB][hapmap];0.87[ASN][1000 genomes] |
rs897095 | 0.87[ASN][1000 genomes] |
rs897096 | 0.87[ASN][1000 genomes] |
rs897097 | 0.91[CHB][hapmap];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006170 | chr2:55530179-55809251 | Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv520581 | chr2:55622825-55903016 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
3 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:55695800-55697200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |