Variant report

Variant	rs11884969
Chromosome Location	chr2:168335656-168335657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11885713	1.00[AMR][1000 genomes]
rs11891529	1.00[AMR][1000 genomes]
rs11895022	1.00[AMR][1000 genomes]
rs11897122	1.00[AMR][1000 genomes]
rs11897598	1.00[AMR][1000 genomes]
rs11899536	1.00[AMR][1000 genomes]
rs11900374	1.00[AMR][1000 genomes]
rs11901733	1.00[AMR][1000 genomes]
rs16853661	1.00[AMR][1000 genomes]
rs60869129	1.00[AMR][1000 genomes]
rs73017796	1.00[AMR][1000 genomes]
rs73019781	1.00[AMR][1000 genomes]
rs73021752	1.00[AMR][1000 genomes]
rs73022102	1.00[AMR][1000 genomes]
rs73023846	1.00[AMR][1000 genomes]
rs73024036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168328600-168336800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168328800-168336200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:168329000-168336000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:168332400-168336400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:168332600-168336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:168332600-168337000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:168332800-168336000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:168332800-168337000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:168332800-168337400	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:168333000-168337200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:168333200-168337000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:168334000-168336400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:168334000-168336600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:168334800-168336200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:168335000-168336000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:168335600-168336600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:168335600-168336800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:168335600-168336800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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