Variant report

Variant	rs11901733
Chromosome Location	chr2:168244718-168244719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11884969	1.00[AMR][1000 genomes]
rs11885713	1.00[AMR][1000 genomes]
rs11891529	1.00[AMR][1000 genomes]
rs11895022	1.00[AMR][1000 genomes]
rs11897122	1.00[AMR][1000 genomes]
rs11897598	1.00[AMR][1000 genomes]
rs11899536	1.00[AMR][1000 genomes]
rs11900374	1.00[AMR][1000 genomes]
rs16853661	1.00[AMR][1000 genomes]
rs60869129	1.00[AMR][1000 genomes]
rs73017796	1.00[AMR][1000 genomes]
rs73019781	1.00[AMR][1000 genomes]
rs73021752	1.00[AMR][1000 genomes]
rs73022102	1.00[AMR][1000 genomes]
rs73023846	1.00[AMR][1000 genomes]
rs73024036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv431790	chr2:168217873-168273530	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168236800-168246200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:168237200-168245800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:168237600-168246400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:168238000-168245800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:168238000-168247800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:168240200-168245200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:168241800-168246000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:168242200-168255200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:168242400-168244800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:168243400-168246800	Enhancers	Fetal Brain Male	brain
11	chr2:168243600-168244800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr2:168243600-168244800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:168243800-168246000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:168244000-168245600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:168244200-168244800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:168244400-168245200	Enhancers	Fetal Brain Female	brain
17	chr2:168244400-168245800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:168244600-168245000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr2:168244600-168245000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:168244600-168245200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:168244600-168246000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:168244600-168246400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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