Variant report

Variant	rs73023846
Chromosome Location	chr2:168273973-168273974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11884969	1.00[AMR][1000 genomes]
rs11885713	1.00[AMR][1000 genomes]
rs11891529	1.00[AMR][1000 genomes]
rs11895022	1.00[AMR][1000 genomes]
rs11897122	1.00[AMR][1000 genomes]
rs11897598	1.00[AMR][1000 genomes]
rs11899536	1.00[AMR][1000 genomes]
rs11900374	1.00[AMR][1000 genomes]
rs11901733	1.00[AMR][1000 genomes]
rs16853661	1.00[AMR][1000 genomes]
rs60869129	1.00[AMR][1000 genomes]
rs73017796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019781	1.00[AMR][1000 genomes]
rs73021752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022102	1.00[AMR][1000 genomes]
rs73024036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2760556	chr2:168259049-168283244	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168263600-168278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168266000-168277400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:168273000-168274200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:168273200-168278000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:168273200-168279000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:168273400-168278200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:168273800-168275600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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