Variant report

Variant	rs60869129
Chromosome Location	chr2:168365413-168365414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11884969	1.00[AMR][1000 genomes]
rs11885713	1.00[AMR][1000 genomes]
rs11891529	1.00[AMR][1000 genomes]
rs11895022	1.00[AMR][1000 genomes]
rs11897122	1.00[AMR][1000 genomes]
rs11897598	1.00[AMR][1000 genomes]
rs11899536	1.00[AMR][1000 genomes]
rs11900374	1.00[AMR][1000 genomes]
rs11901733	1.00[AMR][1000 genomes]
rs16853661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017796	1.00[AMR][1000 genomes]
rs73019781	1.00[AMR][1000 genomes]
rs73021752	1.00[AMR][1000 genomes]
rs73022102	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023846	1.00[AMR][1000 genomes]
rs73024036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168338200-168366000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:168364400-168367000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:168364600-168365600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:168365000-168366200	Weak transcription	Fetal Lung	lung
5	chr2:168365000-168366800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:168365000-168367200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:168365200-168365800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:168365200-168366000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:168365200-168366800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:168365400-168365800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:168365400-168366000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:168365400-168366800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:168365400-168367000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:168365400-168367000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:168365400-168367200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:168365400-168367400	Enhancers	HUVEC	blood vessel
17	chr2:168365400-168367800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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