Variant report

Variant	rs11886946
Chromosome Location	chr2:21305587-21305588
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10205849	1.00[CEU][hapmap]
rs11892905	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11893021	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11893753	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11894096	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11894310	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11899839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11900335	0.80[ASN][1000 genomes]
rs12172886	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12713799	1.00[CEU][hapmap]
rs12720851	1.00[CEU][hapmap]
rs12720854	1.00[CEU][hapmap]
rs1544977	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17041755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1897084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2337384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56885855	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57024468	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57666320	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57922105	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58612563	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58658975	0.82[ASN][1000 genomes]
rs60132502	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60403956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60857806	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61086479	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61142046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6757883	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7422168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv518443	chr2:21300770-21305587	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21304800-21306200	Weak transcription	Aorta	Aorta

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