Variant report

Variant	rs57922105
Chromosome Location	chr2:21278213-21278214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11886946	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11892905	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11893021	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11893753	1.00[EUR][1000 genomes]
rs11894096	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11894310	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11899839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12172886	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1544977	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17041755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1897084	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2337384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56885855	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57024468	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57666320	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58612563	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60132502	1.00[EUR][1000 genomes]
rs60403956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60857806	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61086479	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61142046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6757883	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7422168	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21271200-21279000	Weak transcription	Fetal Intestine Small	intestine
2	chr2:21274400-21278800	Enhancers	HepG2	liver
3	chr2:21278200-21278400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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