Variant report
| Variant | rs11894310 |
|---|---|
| Chromosome Location | chr2:21286017-21286018 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:20852272..20854551-chr2:21285830..21287375,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11886946 | 0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11892905 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11893021 | 0.91[ASN][1000 genomes] |
| rs11893753 | 0.89[EUR][1000 genomes] |
| rs11894096 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11899839 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12172886 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1544977 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17041755 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1897084 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2337384 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56885855 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57024468 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57666320 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs57922105 | 0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58612563 | 0.93[ASN][1000 genomes] |
| rs60132502 | 0.89[EUR][1000 genomes] |
| rs60403956 | 0.89[EUR][1000 genomes] |
| rs60857806 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61086479 | 0.88[ASN][1000 genomes] |
| rs61142046 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6757883 | 0.87[ASN][1000 genomes] |
| rs7422168 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873728 | chr2:21250914-21460786 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21284800-21288400 | Weak transcription | HepG2 | liver |
