Variant report

Variant	rs11899839
Chromosome Location	chr2:21318458-21318459
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11886946	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11892905	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11893021	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11893753	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11894096	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11894310	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11900335	0.84[ASN][1000 genomes]
rs12172886	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1544977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17041755	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1897084	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2337384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56885855	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57024468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57666320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57922105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58612563	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58658975	0.85[ASN][1000 genomes]
rs60132502	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60403956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60857806	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61086479	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61142046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6757883	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7422168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21315800-21320000	Enhancers	HepG2	liver
3	chr2:21315800-21326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:21316000-21319200	Weak transcription	Adipose Nuclei	Adipose
5	chr2:21316000-21319400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:21317600-21320000	Active TSS	Liver	Liver
7	chr2:21318200-21318800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:21318200-21319600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:21318200-21322800	Enhancers	Fetal Intestine Large	intestine
10	chr2:21318200-21323600	Enhancers	Fetal Intestine Small	intestine
11	chr2:21318400-21322400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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