Variant report
| Variant | rs11888428 |
|---|---|
| Chromosome Location | chr2:101319672-101319673 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:101317939..101320391-chr2:101320823..101323497,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10197594 | 1.00[EUR][1000 genomes] |
| rs11898633 | 0.83[EUR][1000 genomes] |
| rs11901892 | 1.00[EUR][1000 genomes] |
| rs13392425 | 1.00[EUR][1000 genomes] |
| rs17024599 | 1.00[EUR][1000 genomes] |
| rs34127796 | 1.00[EUR][1000 genomes] |
| rs4638814 | 1.00[EUR][1000 genomes] |
| rs58227608 | 1.00[EUR][1000 genomes] |
| rs60974130 | 1.00[EUR][1000 genomes] |
| rs61211218 | 1.00[EUR][1000 genomes] |
| rs6736749 | 1.00[EUR][1000 genomes] |
| rs6744622 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72969818 | 0.83[EUR][1000 genomes] |
| rs72971714 | 1.00[EUR][1000 genomes] |
| rs72971719 | 1.00[EUR][1000 genomes] |
| rs72977500 | 1.00[EUR][1000 genomes] |
| rs72979410 | 1.00[EUR][1000 genomes] |
| rs72979416 | 1.00[EUR][1000 genomes] |
| rs72982877 | 1.00[EUR][1000 genomes] |
| rs73967606 | 0.83[EUR][1000 genomes] |
| rs73967607 | 0.83[EUR][1000 genomes] |
| rs73967611 | 0.83[EUR][1000 genomes] |
| rs73967613 | 0.83[EUR][1000 genomes] |
| rs73967614 | 0.83[EUR][1000 genomes] |
| rs73967615 | 0.83[EUR][1000 genomes] |
| rs73967635 | 1.00[EUR][1000 genomes] |
| rs7590637 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916792 | chr2:101021066-101525200 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv582532 | chr2:101029002-101531943 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv834314 | chr2:101210940-101410477 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv1002372 | chr2:101312468-101335019 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:101319600-101320000 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr2:101319600-101320200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
