Variant report

Variant	rs13392425
Chromosome Location	chr2:101322123-101322124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:101317939..101320391-chr2:101320823..101323497,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10197594	1.00[EUR][1000 genomes]
rs11888428	1.00[EUR][1000 genomes]
rs11898633	0.83[EUR][1000 genomes]
rs11901892	1.00[EUR][1000 genomes]
rs17024599	1.00[EUR][1000 genomes]
rs34127796	1.00[EUR][1000 genomes]
rs4638814	1.00[EUR][1000 genomes]
rs58227608	1.00[EUR][1000 genomes]
rs60974130	1.00[EUR][1000 genomes]
rs61211218	1.00[EUR][1000 genomes]
rs6736749	1.00[EUR][1000 genomes]
rs6744622	1.00[EUR][1000 genomes]
rs72969818	0.83[EUR][1000 genomes]
rs72971714	1.00[EUR][1000 genomes]
rs72971719	1.00[EUR][1000 genomes]
rs72977500	1.00[EUR][1000 genomes]
rs72979410	1.00[EUR][1000 genomes]
rs72979416	1.00[EUR][1000 genomes]
rs72982877	1.00[EUR][1000 genomes]
rs73967606	0.83[EUR][1000 genomes]
rs73967607	0.83[EUR][1000 genomes]
rs73967611	0.83[EUR][1000 genomes]
rs73967613	0.83[EUR][1000 genomes]
rs73967614	0.83[EUR][1000 genomes]
rs73967615	0.83[EUR][1000 genomes]
rs73967635	1.00[EUR][1000 genomes]
rs7590637	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv834314	chr2:101210940-101410477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1002372	chr2:101312468-101335019	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv932025	chr2:101322079-102083193	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101319800-101323600	Enhancers	Primary T cells from cord blood	blood
2	chr2:101320000-101322800	Weak transcription	Fetal Brain Male	brain
3	chr2:101320600-101322800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:101320800-101322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:101320800-101323400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:101321000-101322800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr2:101321000-101323200	Weak transcription	Primary T cells fromperipheralblood	blood

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