Variant report

Variant	rs6744622
Chromosome Location	chr2:101271309-101271310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:101244463..101246653-chr2:101271158..101274017,2	MCF-7	breast:
2	chr2:101262963..101265350-chr2:101269447..101271843,2	K562	blood:
3	chr2:101262734..101264650-chr2:101271129..101273492,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10197594	1.00[EUR][1000 genomes]
rs11888428	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11898633	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11901892	1.00[EUR][1000 genomes]
rs13392425	1.00[EUR][1000 genomes]
rs17024599	1.00[EUR][1000 genomes]
rs34127796	1.00[EUR][1000 genomes]
rs4638814	1.00[EUR][1000 genomes]
rs58227608	1.00[EUR][1000 genomes]
rs58488423	0.85[AFR][1000 genomes]
rs60974130	1.00[EUR][1000 genomes]
rs61211218	1.00[EUR][1000 genomes]
rs6736749	1.00[EUR][1000 genomes]
rs72969818	0.83[EUR][1000 genomes]
rs72971714	1.00[EUR][1000 genomes]
rs72971719	1.00[EUR][1000 genomes]
rs72977500	1.00[EUR][1000 genomes]
rs72979410	1.00[EUR][1000 genomes]
rs72979416	1.00[EUR][1000 genomes]
rs72982877	1.00[EUR][1000 genomes]
rs73967606	0.83[EUR][1000 genomes]
rs73967607	0.83[EUR][1000 genomes]
rs73967611	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73967613	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73967614	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73967615	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73967635	1.00[EUR][1000 genomes]
rs7590637	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv834314	chr2:101210940-101410477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv582534	chr2:101263701-101275822	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101265400-101272000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr2:101265600-101271600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr2:101265600-101271600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr2:101265800-101271400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr2:101268000-101272800	Enhancers	Fetal Thymus	thymus
6	chr2:101270400-101277000	Weak transcription	Primary T cells from cord blood	blood
7	chr2:101271000-101271600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:101271200-101271600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links