Variant report

Variant	rs11898633
Chromosome Location	chr2:101254559-101254560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10197594	0.83[EUR][1000 genomes]
rs11888428	0.83[EUR][1000 genomes]
rs11901892	0.83[EUR][1000 genomes]
rs13392425	0.83[EUR][1000 genomes]
rs17024599	0.83[EUR][1000 genomes]
rs34127796	0.83[EUR][1000 genomes]
rs4638814	0.83[EUR][1000 genomes]
rs57615417	0.83[EUR][1000 genomes]
rs58227608	0.83[EUR][1000 genomes]
rs60974130	0.83[EUR][1000 genomes]
rs61211218	0.83[EUR][1000 genomes]
rs6736749	0.83[EUR][1000 genomes]
rs6744622	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72969818	1.00[EUR][1000 genomes]
rs72971714	0.83[EUR][1000 genomes]
rs72971719	0.83[EUR][1000 genomes]
rs72977500	0.83[EUR][1000 genomes]
rs72979410	0.83[EUR][1000 genomes]
rs72979416	0.83[EUR][1000 genomes]
rs72982877	0.83[EUR][1000 genomes]
rs73967606	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73967607	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73967611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73967613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73967614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73967615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73967635	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv834314	chr2:101210940-101410477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101253400-101254600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:101254200-101255000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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