Variant report

Variant	rs11889366
Chromosome Location	chr2:210263288-210263289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210257807..210260285-chr2:210262034..210264027,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10153809	0.90[ASN][1000 genomes]
rs10174291	0.90[ASN][1000 genomes]
rs10182475	1.00[JPT][hapmap]
rs10185216	0.82[ASN][1000 genomes]
rs10200389	0.90[ASN][1000 genomes]
rs10200539	0.90[ASN][1000 genomes]
rs10210266	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10932297	0.95[ASN][1000 genomes]
rs10932301	0.90[ASN][1000 genomes]
rs11678209	0.80[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11885999	0.91[CEU][hapmap]
rs11900413	0.96[ASN][1000 genomes]
rs11904626	0.90[ASN][1000 genomes]
rs12613165	1.00[JPT][hapmap]
rs12614926	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12614974	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12617330	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12621534	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12622130	0.98[ASN][1000 genomes]
rs12623404	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12623555	0.96[ASN][1000 genomes]
rs12694180	0.95[ASN][1000 genomes]
rs13005529	0.95[ASN][1000 genomes]
rs13023264	0.95[ASN][1000 genomes]
rs13024490	0.98[ASN][1000 genomes]
rs13028173	0.98[ASN][1000 genomes]
rs13028553	0.98[ASN][1000 genomes]
rs13033819	0.88[ASN][1000 genomes]
rs13034750	0.93[ASN][1000 genomes]
rs13391766	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13391768	0.93[ASN][1000 genomes]
rs13419929	0.83[CEU][hapmap]
rs1374333	0.98[ASN][1000 genomes]
rs1446593	1.00[JPT][hapmap]
rs1446596	0.80[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16842875	0.98[ASN][1000 genomes]
rs16842884	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16842908	0.87[YRI][hapmap]
rs16843022	1.00[CEU][hapmap]
rs169636	0.82[CEU][hapmap]
rs17236116	0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2028893	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2048250	0.83[CEU][hapmap]
rs2123701	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs28556312	0.90[ASN][1000 genomes]
rs28558587	0.86[ASN][1000 genomes]
rs28610349	0.90[ASN][1000 genomes]
rs288070	0.82[CEU][hapmap]
rs288071	0.82[CEU][hapmap]
rs288079	0.83[CEU][hapmap]
rs288081	0.82[CEU][hapmap]
rs288087	0.83[CEU][hapmap]
rs288094	0.82[CEU][hapmap]
rs288096	0.82[CEU][hapmap]
rs35424736	0.84[ASN][1000 genomes]
rs60358187	0.91[ASN][1000 genomes]
rs6435528	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6435529	0.90[ASN][1000 genomes]
rs6726061	0.82[CEU][hapmap]
rs6733750	0.95[ASN][1000 genomes]
rs6751612	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6761283	0.80[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs72492734	0.84[ASN][1000 genomes]
rs72995681	0.90[ASN][1000 genomes]
rs73060566	0.84[ASN][1000 genomes]
rs7557610	0.98[ASN][1000 genomes]
rs7563521	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7568431	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7568858	0.98[ASN][1000 genomes]
rs7569773	0.90[ASN][1000 genomes]
rs7575409	0.98[ASN][1000 genomes]
rs7577392	0.96[ASN][1000 genomes]
rs7580512	0.91[CEU][hapmap]
rs7580883	0.82[ASN][1000 genomes]
rs7593008	0.82[ASN][1000 genomes]
rs7594469	0.85[ASN][1000 genomes]
rs7594842	0.90[ASN][1000 genomes]
rs7595924	0.90[ASN][1000 genomes]
rs7602104	0.98[ASN][1000 genomes]
rs7608377	0.95[ASN][1000 genomes]
rs7608854	0.90[ASN][1000 genomes]
rs9288407	0.95[ASN][1000 genomes]
rs992028	0.90[ASN][1000 genomes]
rs993784	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9967799	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210261200-210265400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210261200-210267200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:210263000-210263800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210263200-210263800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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