Variant report

Variant	rs11890422
Chromosome Location	chr2:125184125-125184126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11123046	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs11123048	0.81[ASN][1000 genomes]
rs12472796	0.86[ASN][1000 genomes]
rs12476991	0.96[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs13008912	0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1503999	0.82[CHB][hapmap]
rs1504003	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17011501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs17675618	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2420852	0.82[JPT][hapmap]
rs2421083	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2920059	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs34918042	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6727886	0.95[JPT][hapmap]
rs728050	0.81[ASN][1000 genomes]
rs884376	0.83[CHB][hapmap]
rs905628	0.81[CHB][hapmap]
rs905631	0.85[ASN][1000 genomes]
rs905632	0.96[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3431891	chr2:125183752-125186914	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125183800-125184600	Enhancers	Liver	Liver
2	chr2:125183800-125184800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:125183800-125184800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:125183800-125184800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:125184000-125184600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:125184000-125184600	Enhancers	Aorta	Aorta
7	chr2:125184000-125184800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:125184000-125184800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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