Variant report

Variant	rs13008912
Chromosome Location	chr2:125192644-125192645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11123046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11890422	0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12472796	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12476991	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs1503999	0.88[CEU][hapmap];0.81[CHD][hapmap]
rs1504003	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17011501	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs17675618	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2420852	0.82[JPT][hapmap]
rs2421083	0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]
rs2920059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs34918042	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap]
rs6727886	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs7604317	0.80[EUR][1000 genomes]
rs884376	0.85[CEU][hapmap]
rs905628	0.84[CEU][hapmap]
rs905632	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125192200-125193000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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