Variant report
| Variant | rs17011501 |
|---|---|
| Chromosome Location | chr2:125183450-125183451 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11123046 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs11123048 | 0.81[ASN][1000 genomes] |
| rs11890422 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12472796 | 0.86[ASN][1000 genomes] |
| rs12476991 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs13008912 | 0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1503999 | 0.82[CHB][hapmap] |
| rs1504003 | 0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs17675618 | 0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs2420852 | 0.82[CHD][hapmap];0.82[JPT][hapmap] |
| rs2421083 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2920059 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap] |
| rs34918042 | 0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6727886 | 0.95[JPT][hapmap] |
| rs728050 | 0.81[ASN][1000 genomes] |
| rs884376 | 0.82[CHB][hapmap] |
| rs905628 | 0.81[CHB][hapmap] |
| rs905631 | 0.85[ASN][1000 genomes] |
| rs905632 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
