Variant report
Variant | rs905628 |
---|---|
Chromosome Location | chr2:125272968-125272969 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11123046 | 0.84[CEU][hapmap];0.85[YRI][hapmap] |
rs11890422 | 0.81[CHB][hapmap] |
rs12476991 | 0.85[CEU][hapmap];0.86[CHB][hapmap] |
rs13008912 | 0.84[CEU][hapmap] |
rs13026001 | 0.85[ASN][1000 genomes] |
rs1503999 | 0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.99[MKK][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes] |
rs1504003 | 0.81[CHB][hapmap];0.82[JPT][hapmap] |
rs17011501 | 0.81[CHB][hapmap] |
rs17675618 | 0.81[CHB][hapmap];0.82[JPT][hapmap] |
rs2421083 | 0.81[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap] |
rs2920059 | 0.85[CEU][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.82[YRI][hapmap] |
rs34918042 | 0.81[CHB][hapmap];0.88[CHD][hapmap] |
rs56822773 | 0.80[ASN][1000 genomes] |
rs6707121 | 0.84[ASN][1000 genomes] |
rs6722179 | 0.80[CHD][hapmap] |
rs6722312 | 0.82[CHD][hapmap] |
rs7604317 | 0.83[ASN][1000 genomes] |
rs884376 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs905632 | 0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
2 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv834357 | chr2:125258157-125421507 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:125272000-125273000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |