Variant report

Variant	rs6722179
Chromosome Location	chr2:125278326-125278327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11686659	0.95[CEU][hapmap]
rs11693506	0.95[CEU][hapmap]
rs12053037	0.95[CEU][hapmap]
rs12612022	0.81[TSI][hapmap]
rs12618343	0.95[CEU][hapmap]
rs12999580	0.94[CEU][hapmap]
rs13034228	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17011555	0.95[CEU][hapmap]
rs2420856	0.89[CHB][hapmap]
rs2420865	0.95[CEU][hapmap]
rs2420868	0.95[CEU][hapmap]
rs4848242	0.95[CEU][hapmap]
rs4848243	0.82[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs6722312	0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6745541	0.95[CEU][hapmap]
rs7566257	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs905628	0.80[CHD][hapmap]
rs905629	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125277200-125278600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:125277400-125278400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:125277600-125279000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr2:125277600-125279400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:125277600-125279800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:125278000-125279400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:125278000-125279400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:125278200-125280000	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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